-
Notifications
You must be signed in to change notification settings - Fork 29
CitingProjects
[1] L. Adlung, S. Kar, M.-C. Wagner, B. She, S. Chakraborty, J. Bao, S. Lattermann, M. Boerries, H. Busch, P. Wuchter, et al. Protein abundance of AKT and ERK pathway components governs cell type-specic regulation of proliferation. Molecular Systems Biology, 13(1):904, 2017. [2] J. Bachmann, A. Raue, M. Schilling, M. B�ohm, C. Kreutz, D. Kaschek, H. Busch, N. Gretz, W. Lehmann, J. Timmer, and U. Klingm�uller. Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range. Molecular Systems Biology, 7:516, 2011. [3] R. Beer, K. Herbst, N. Ignatiadis, I. Kats, L. Adlung, H. Meyer, D. Niopek, T. Christiansen, F. Georgi, N. Kurzawa, J. Meichsner, S. Rabe, A. Riedel, J. Sachs, J. Schessner, F. Schmidt, P. Walch, K. Niopek, T. Heinemann, R. Eils, and B. Di Ventura. Creating functional engineered variants of the single-module nonribosomal peptide synthetase IndC by T domain exchange. Molecular bioSystems, 10(7):1709{18, 2014. [4] H. M. Beyer, R. Engesser, M. H�orner, J. Koschmieder, P. Beyer, J. Timmer, M. D. Zurbriggen, and W. Weber. Synthetic biology makes polymer materials count. Advanced Materials, 0(0):1800472, 2018. [5] M. E. Boehm, L. Adlung, M. Schilling, S. Roth, U. Klingm�uller, and W. D. Lehmann. Identication of isoform-specic dynamics in phosphorylation-dependent STAT5 dimerization by quantitative mass spectrometry and mathematical modeling. Journal of Proteome Research, 13(12):5685{94, 2014. [6] R. Borowiak, W. Reichardt, D. Kurzhunov, C. Schuch, J. Leupold, A. J. Krat, M. Reisert, T. Lange, E. Fischer, and M. Bock. Initial investigation of glucose metabolism in mouse brain using enriched 17O-glucose and dynamic 17O-MRS. NMR in Biomedicine, 30(8), 2017. [7] L. A. D'Alessandro, R. Samaga, T. Maiwald, S.-H. Rho, S. Bonefas, A. Raue, N. Iwamoto, A. Kienast, K. Waldow, R. Meyer, et al. Disentangling the complexity of hgf signaling by combining qualitative and quantitative modeling. PLoS compu- tational biology, 11(4):e1004192, 2015. [8] P. Dutta, V. Devaraj, and B. Bose. A negative feedback regulates the ow of signal through akt/mtorc1/s6k1 pathway. bioRxiv, page 147710, 2017. [9] E. Gin, A. C. R. Diernfellner, M. Brunner, and T. H�ofer. The Neurospora photoreceptor VIVID exerts negative and positive control on light sensing to achieve adaptation. Molecular Systems Biology, 9(667):667, 2013.
- Installation and system requirements
- Setting up models
- First steps
- Advanced events and pre-equilibration
- Computation of integration-based prediction bands
- How is the architecture of the code and the most important commands?
- What are the most important fields of the global variable ar?
- What are the most important functions?
- Optimization algorithms available in the d2d-framework
- Objective function, likelhood and chi-square in the d2d framework
- How to set up priors?
- How to set up steady state constraints?
- How do I restart the solver upon a step input?
- How to deal with integrator tolerances?
- How to implement a bolus injection?
- How to implement washing and an injection?
- How to implement a moment ODE model?
- How to run PLE calculations on a Cluster?