merge with master branch and resolve conflicts

Author: vtavana

.github/workflows/array-api-skips.txt

@@ -0,0 +1,57 @@
+# array API tests to be skipped
+
+# no 'uint8' dtype
+array_api_tests/test_array_object.py::test_getitem_masking
+
+# missing unique-like functions
+array_api_tests/test_has_names.py::test_has_names[set-unique_all]
+array_api_tests/test_has_names.py::test_has_names[set-unique_counts]
+array_api_tests/test_has_names.py::test_has_names[set-unique_inverse]
+array_api_tests/test_has_names.py::test_has_names[set-unique_values]
+array_api_tests/test_set_functions.py::test_unique_all
+array_api_tests/test_set_functions.py::test_unique_counts
+array_api_tests/test_set_functions.py::test_unique_inverse
+array_api_tests/test_set_functions.py::test_unique_values
+array_api_tests/test_signatures.py::test_func_signature[unique_all]
+array_api_tests/test_signatures.py::test_func_signature[unique_counts]
+array_api_tests/test_signatures.py::test_func_signature[unique_inverse]
+array_api_tests/test_signatures.py::test_func_signature[unique_values]
+
+# no '__array_namespace_info__' function
+array_api_tests/test_has_names.py::test_has_names[info-__array_namespace_info__]
+array_api_tests/test_inspection_functions.py::test_array_namespace_info
+array_api_tests/test_inspection_functions.py::test_array_namespace_info_dtypes
+array_api_tests/test_searching_functions.py::test_searchsorted
+array_api_tests/test_signatures.py::test_func_signature[__array_namespace_info__]
+array_api_tests/test_signatures.py::test_info_func_signature[capabilities]
+array_api_tests/test_signatures.py::test_info_func_signature[default_device]
+array_api_tests/test_signatures.py::test_info_func_signature[default_dtypes]
+array_api_tests/test_signatures.py::test_info_func_signature[devices]
+array_api_tests/test_signatures.py::test_info_func_signature[dtypes]
+
+# do not return a namedtuple
+array_api_tests/test_linalg.py::test_eigh
+array_api_tests/test_linalg.py::test_slogdet
+array_api_tests/test_linalg.py::test_svd
+
+# hypothesis found failures
+array_api_tests/test_linalg.py::test_qr
+array_api_tests/test_operators_and_elementwise_functions.py::test_clip
+
+# unexpected result is returned
+array_api_tests/test_operators_and_elementwise_functions.py::test_asin
+array_api_tests/test_operators_and_elementwise_functions.py::test_asinh
+
+# missing 'correction' keyword argument
+array_api_tests/test_signatures.py::test_func_signature[std]
+array_api_tests/test_signatures.py::test_func_signature[var]
+
+# wrong shape is returned
+array_api_tests/test_linalg.py::test_vecdot
+array_api_tests/test_linalg.py::test_linalg_vecdot
+
+# tuple index out of range
+array_api_tests/test_linalg.py::test_linalg_matmul
+
+# arrays have different values
+array_api_tests/test_linalg.py::test_linalg_tensordot

.github/workflows/build-sphinx.yml

@@ -25,7 +25,7 @@ jobs:
   build-and-deploy:
     name: Build and Deploy Docs
 
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
 
     permissions:
       # Needed to cancel any previous runs that are not completed for a given workflow
@@ -89,7 +89,6 @@ jobs:
         run: |
           sudo apt-get install enchant-2
 
-      # https://github.com/marketplace/actions/checkout
       - name: Install nvidia-cuda support drivers
         run: |
           sudo add-apt-repository ppa:graphics-drivers/ppa
@@ -102,8 +101,20 @@ jobs:
         with:
           fetch-depth: 0
 
-      # https://github.com/marketplace/actions/setup-miniconda
       - name: Setup miniconda
+        id: setup_miniconda
+        continue-on-error: true
+        uses: conda-incubator/setup-miniconda@d2e6a045a86077fb6cad6f5adf368e9076ddaa8d # v3.1.0
+        with:
+          miniforge-version: latest
+          use-mamba: 'true'
+          channels: conda-forge
+          conda-remove-defaults: 'true'
+          python-version: ${{ env.python-ver }}
+          activate-environment: 'docs'
+
+      - name: ReSetup miniconda
+        if: steps.setup_miniconda.outcome == 'failure'
         uses: conda-incubator/setup-miniconda@d2e6a045a86077fb6cad6f5adf368e9076ddaa8d # v3.1.0
         with:
           miniforge-version: latest

.github/workflows/check-mkl-interfaces.yaml

@@ -28,11 +28,11 @@ env:
 
 jobs:
   test_by_tag:
-    name: Run on ['${{ matrix.os }}', python='${{ matrix.python }}'] with oneMKL tag
+    name: Run tests with oneMKL tag
 
     strategy:
       matrix:
-        python: ['3.12']
+        python: ['3.13']
         os: [ubuntu-22.04] # windows-2019 - no DFT support for Windows in oneMKL
 
     permissions:
@@ -108,7 +108,7 @@ jobs:
         id: run_tests
         uses: nick-fields/retry@7152eba30c6575329ac0576536151aca5a72780e # v3.0.0
         with:
-          timeout_minutes: 10
+          timeout_minutes: 12
           max_attempts: ${{ env.RUN_TESTS_MAX_ATTEMPTS }}
           retry_on: any
           command: |
@@ -121,11 +121,11 @@ jobs:
           SYCL_CACHE_PERSISTENT: 1
 
   test_by_branch:
-    name: Run on ['${{ matrix.os }}', python='${{ matrix.python }}'] with oneMKL develop branch
+    name: Run tests with oneMKL develop branch
 
     strategy:
       matrix:
-        python: ['3.12']
+        python: ['3.13']
         os: [ubuntu-22.04] # windows-2019 - no DFT support for Windows in oneMKL
 
     permissions:
@@ -216,7 +216,7 @@ jobs:
         id: run_tests
         uses: nick-fields/retry@7152eba30c6575329ac0576536151aca5a72780e # v3.0.0
         with:
-          timeout_minutes: 10
+          timeout_minutes: 12
           max_attempts: ${{ env.RUN_TESTS_MAX_ATTEMPTS }}
           retry_on: any
           command: |