Merge branch 'master' into master-dev

Author: theogf

Project.toml

@@ -1,27 +1,23 @@
 name = "KernelFunctions"
 uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392"
-version = "0.2.0"
+version = "0.1.0"
 
 [deps]
 Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
-IRTools = "7869d1d1-7146-5819-86e3-90919afe41df"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150"
 SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
 StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
-ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444"
 
 [compat]
-FiniteDifferences = ">= 0.7.2"
+julia = "1.0"
+PDMats = "0.9.9"
+SpecialFunctions = "0.7.2"
+Distances = "0.8.2"
 
 [extras]
-FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000"
-ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
-Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [targets]
-test = ["FiniteDifferences", "Tracker", "ForwardDiff", "Random", "Test"]
+test = ["Random", "Test"]

README.md

@@ -28,7 +28,7 @@ The aim is to make the API as model-agnostic as possible while still being user-
   k₄ = 0.5*SqExponentialKernel()*LinearKernel(0.5) + 0.4*k₂
   K₄ = kernelmatrix(k,X,obsdim=1)
 
-  heatmap([K₁,K₂,K₃,K₄],yflip=false,colorbar=false)
+  plot(heatmap.([K₁,K₂,K₃,K₄],yflip=true,colorbar=false)...,layout=(2,2))
 ```
 <p align=center>
   <img src="docs/src/assets/heatmap_combination.png" width=400px>

src/KernelFunctions.jl

@@ -13,14 +13,12 @@ export KernelSum, KernelProduct
 
 
 using Distances, LinearAlgebra
-using Zygote: @adjoint
 using SpecialFunctions: lgamma, besselk
 using StatsFuns: logtwo
-using PDMats
+using PDMats: PDMat
 
 const defaultobs = 2
 
-# include("zygote_rules.jl")
 include("utils.jl")
 include("distances/dotproduct.jl")
 include("distances/delta.jl")

test/runtests.jl

@@ -1,12 +1,7 @@
 using Test
 using KernelFunctions
 using Distances
-# using FiniteDifferences
 using Random
-using Zygote
-
-# Helpful functionality for writing tests.
-# include("test_util.jl")
 
 @testset "KernelFunctions" begin
 include("test_kernelmatrix.jl")