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Tutorial/Demo for Modular Patch Inferer (#1316)
### Description This PR adds a notebook to demonstrate how the new [modular patch inference](Project-MONAI/MONAI#5837) can used: - `PatchInferer` - `AvgMerger` - `SlidingWindowSplitter` - `WSISlidingWindowSplitter` ### Checks <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Avoid including large-size files in the PR. - [x] Clean up long text outputs from code cells in the notebook. - [x] For security purposes, please check the contents and remove any sensitive info such as user names and private key. - [x] Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the `./figure` folder - [x] Notebook runs automatically `./runner.sh -t <path to .ipynb file>` --------- Signed-off-by: Behrooz <[email protected]>
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figures/patch_inferer.jpg

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patch_inferer/modular_patch_inferer.ipynb

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runner.sh

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@@ -69,6 +69,7 @@ doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" lazy_resampling_fun
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doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" lazy_resampling_compose.ipynb)
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doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" TensorRT_inference_acceleration.ipynb)
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doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" lazy_resampling_benchmark.ipynb)
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doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" modular_patch_inferer.ipynb)
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# Execution of the notebook in these folders / with the filename cannot be automated
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skip_run_papermill=()

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