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fixes url; workaround to skip 1550 (#1551)
temporarily skip the test #1550 while we are improving the premerge runner. ### Checks <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [ ] Avoid including large-size files in the PR. - [ ] Clean up long text outputs from code cells in the notebook. - [ ] For security purposes, please check the contents and remove any sensitive info such as user names and private key. - [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the `./figure` folder - [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>` Signed-off-by: Wenqi Li <[email protected]>
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bundle/README.md

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@@ -14,7 +14,7 @@ Start the tutorial notebooks on constructing bundles:
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2. [MedNIST Classification](./02_mednist_classification.ipynb): train a network using the bundle for doing a real task.
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3. [MedNIST Classification With Best Practices](./03_mednist_classification_v2.ipynb): do the same again but better.
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4. [Integrating Existing Code](./04_integrating_code.ipynb): discussion on how to integrate existing, possible non-MONAI, code into a bundle.
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5. [Spleen Segmentation using Pytorch Lightning](./05_spleen_segmentation.ipynb): train a segmentation network using MONAI bundle and Pytorch Lightning.
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5. [Spleen Segmentation using Pytorch Lightning](./05_spleen_segmentation_lightning.ipynb): train a segmentation network using MONAI bundle and Pytorch Lightning.
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More advanced topics are covered in this directory:
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runner.sh

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skip_run_papermill=("${skip_run_papermill[@]}" .*nuclick_training_notebook.ipynb*) # https://github.com/Project-MONAI/tutorials/issues/1542
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skip_run_papermill=("${skip_run_papermill[@]}" .*nuclei_classification_infer.ipynb*) # https://github.com/Project-MONAI/tutorials/issues/1542
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skip_run_papermill=("${skip_run_papermill[@]}" .*nuclick_infer.ipynb*) # https://github.com/Project-MONAI/tutorials/issues/1542
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skip_run_papermill=("${skip_run_papermill[@]}" .*05_spleen_segmentation_lightning.ipynb*) # https://github.com/Project-MONAI/tutorials/issues/1550
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# output formatting
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separator=""

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