adds model_zoo/TCIA_PROSTATEx_Prostate_MRI_Anatomy_Model.ipynb

[kirbyju]

Description

I made the summary more focused on the specific prostate dataset and model being used and also consolidated the setup steps (installations/imports) at the top.

Checks

• Avoid including large-size files in the PR.
• Clean up long text outputs from code cells in the notebook.
• For security purposes, please check the contents and remove any sensitive info such as user names and private key.
• Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
• Notebook runs automatically ./runner.sh -t <path to .ipynb file>

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[wyli]

thanks @kirbyju, now the tests work fine, I mainly

• added a license cell
• updated the import statements (removed most of the --pre flag)
• removed display(df) as it raises an error "stdin:154:1: F821 undefined name 'display'
  display(df)"

please help confirm those changes.

[kirbyju]

Looks good to me. Should I close this pull request or is there something else that needs to happen to complete the merge?

[wyli]

thanks, let's wait for Mingxin's review, then I'll update and merge it.

[kirbyju]

On Google Colab I get the following warnings/errors when I run the Setup step, but it still seems to let me run all of the subsequent steps in the notebook successfully so maybe it's not a problem?

Traceback (most recent call last):
  File "<string>", line 1, in <module>
ModuleNotFoundError: No module named 'monai'
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
pydicom-seg 0.4.0 requires jsonschema<4.0.0,>=3.2.0, but you have jsonschema 4.17.3 which is incompatible.
google-colab 1.0.0 requires notebook~=5.7.16, but you have notebook 6.5.2 which is incompatible.
google-colab 1.0.0 requires tornado~=6.0.4, but you have tornado 6.2 which is incompatible.
flask 1.1.4 requires Jinja2<3.0,>=2.10.1, but you have jinja2 3.1.2 which is incompatible.

[wyli]

thanks, I'm merging this for now, please feel free to raise new PRs to revise it.