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Nov 23, 2023
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14 changes: 7 additions & 7 deletions experiment_management/unet_segmentation_3d_ignite_clearml.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@
"\n",
"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/Project-MONAI/tutorials/blob/main/experiment_management/unet_segmentation_3d_ignite_clearml.ipynb)\n",
"\n",
"This tutorial shows how to use ClearML to manage MONAI experiments. You can integrate ClearML into your code using Monai's built-in handlers: `ClearMLImageHandler`, `ClearMLStatsHandler`, and `ModelCheckpoint`.\n",
"This tutorial shows how to use ClearML to manage MONAI experiments. You can integrate ClearML into your code using MONAI's built-in handlers: `ClearMLImageHandler`, `ClearMLStatsHandler`, and `ModelCheckpoint`.\n",
"\n",
"The MONAI example used here is [3D segmentation with UNet](https://github.com/Project-MONAI/tutorials/blob/main/3d_segmentation/unet_segmentation_3d_ignite.ipynb)."
]
Expand All @@ -31,7 +31,7 @@
"source": [
"## Setup environment\n",
"\n",
"`clearml` comes as part of the `monai[all]` installation. For more information about integrating ClearML into your Monai code, see [here](https://clear.ml/docs/latest/docs/integrations/monai). For more information about using ClearML (experiment management, data management, pipelines, model serving, and more), see [ClearML's official documentation](https://clear.ml/docs/latest/docs/)."
"`clearml` comes as part of the `monai[all]` installation. For more information about integrating ClearML into your MONAI code, see [here](https://clear.ml/docs/latest/docs/integrations/monai). For more information about using ClearML (experiment management, data management, pipelines, model serving, and more), see [ClearML's official documentation](https://clear.ml/docs/latest/docs/)."
],
"metadata": {
"collapsed": false
Expand Down Expand Up @@ -113,7 +113,7 @@
" * Sign up for free to the [ClearML Hosted Service](https://app.clear.ml/)\n",
" * Set up your own server, see [here](https://clear.ml/docs/latest/docs/deploying_clearml/clearml_server).\n",
"\n",
"2. Add you ClearML credentials below. ClearML will use these credentials to connect to your server (see instructions for generating credentials [here](https://clear.ml/docs/latest/docs/getting_started/ds/ds_first_steps/#jupyter-notebook))."
"2. Add your ClearML credentials below. ClearML will use these credentials to connect to your server (see instructions for generating credentials [here](https://clear.ml/docs/latest/docs/getting_started/ds/ds_first_steps/#jupyter-notebook))."
],
"metadata": {
"collapsed": false
Expand Down Expand Up @@ -350,7 +350,7 @@
"# ClearMLStatsHandler plots loss at every iteration\n",
"# Creates a ClearML Task which logs the scalar plots\n",
"task_name = \"UNet segmentation 3d\"\n",
"project_name = \"Monai example\"\n",
"project_name = \"MONAI example\"\n",
"\n",
"train_clearml_stats_handler = ClearMLStatsHandler(\n",
" task_name=task_name, project_name=project_name, log_dir=log_dir, output_transform=lambda x: x\n",
Expand Down Expand Up @@ -513,7 +513,7 @@
{
"cell_type": "markdown",
"source": [
"![Monai ClearML Models](./../figures/monai_clearml_models.png)"
"![MONAI ClearML Models](./../figures/monai_clearml_models.png)"
],
"metadata": {
"id": "Uya6hN7At-C6"
Expand All @@ -534,7 +534,7 @@
{
"cell_type": "markdown",
"source": [
"![monai_clearml_scalars.png](./../figures/monai_clearml_scalars.png)"
"![MONAI ClearML scalars.png](./../figures/monai_clearml_scalars.png)"
],
"metadata": {
"id": "DCLhp4e2uKsd"
Expand All @@ -554,7 +554,7 @@
{
"cell_type": "markdown",
"source": [
"![monai_clearml_debug_samples.png](./../figures/monai_clearml_debug_samples.png)"
"![MONAI ClearML Debug Samples.png](./../figures/monai_clearml_debug_samples.png)"
],
"metadata": {
"id": "AFLJauKxt-Yy"
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