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feature: Add data ingestion only data-wrangler flow recipe generation helper function #2336
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868db55
add helper function to generate no-op (data ingestion only) recipe
jerrypeng7773 21bedbb
Merge branch 'aws:master' into master
jerrypeng7773 854dd10
separate flow generation by source input type + move generation helpe…
jerrypeng7773 8798b65
Merge branch 'aws:master' into master
jerrypeng7773 69ae4bd
create an internal helper function to generate output node
jerrypeng7773 a6a8449
Merge branch 'master' of github.com:jerrypeng7773/sagemaker-python-sdk
jerrypeng7773 2aa256e
Merge branch 'aws:master' into master
jerrypeng7773 06557a8
add ingestion test using dw processor via pipeline execution
jerrypeng7773 dcbfd13
Merge branch 'aws:master' into master
jerrypeng7773 fc6522e
verify the fg query df
jerrypeng7773 b6f9371
Merge branch 'master' into master
ahsan-z-khan 86fa47d
fix tests
jerrypeng7773 05ccfa6
Merge branch 'master' into master
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# Copyright 2020 Amazon.com, Inc. or its affiliates. All Rights Reserved. | ||
# | ||
# Licensed under the Apache License, Version 2.0 (the "License"). You | ||
# may not use this file except in compliance with the License. A copy of | ||
# the License is located at | ||
# | ||
# http://aws.amazon.com/apache2.0/ | ||
# | ||
# or in the "license" file accompanying this file. This file is | ||
# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF | ||
# ANY KIND, either express or implied. See the License for the specific | ||
# language governing permissions and limitations under the License. | ||
# language governing permissions and limitations under the License. | ||
"""Data wrangler helpers for data ingestion.""" | ||
from __future__ import absolute_import | ||
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from typing import Dict | ||
from uuid import uuid4 | ||
from sagemaker.dataset_definition.inputs import ( | ||
RedshiftDatasetDefinition, | ||
AthenaDatasetDefinition, | ||
) | ||
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def generate_data_ingestion_flow_from_s3_input( | ||
input_name: str, | ||
s3_uri: str, | ||
s3_content_type: str = "csv", | ||
s3_has_header: bool = False, | ||
operator_version: str = "0.1", | ||
schema: Dict = None, | ||
): | ||
"""Generate the data ingestion only flow from s3 input | ||
|
||
Args: | ||
input_name (str): the name of the input to flow source node | ||
s3_uri (str): uri for the s3 input to flow source node | ||
s3_content_type (str): s3 input content type | ||
s3_has_header (bool): flag indicating the input has header or not | ||
operator_version: (str): the version of the operator | ||
schema: (typing.Dict): the schema for the data to be ingested | ||
Returns: | ||
dict (typing.Dict): A flow only conduct data ingestion with 1-1 mapping | ||
output_name (str): The output name used to configure | ||
`sagemaker.processing.FeatureStoreOutput` | ||
""" | ||
source_node = { | ||
"node_id": str(uuid4()), | ||
"type": "SOURCE", | ||
"inputs": [], | ||
"outputs": [{"name": "default"}], | ||
"operator": f"sagemaker.s3_source_{operator_version}", | ||
"parameters": { | ||
"dataset_definition": { | ||
"datasetSourceType": "S3", | ||
"name": input_name, | ||
"s3ExecutionContext": { | ||
"s3Uri": s3_uri, | ||
"s3ContentType": s3_content_type, | ||
"s3HasHeader": s3_has_header, | ||
}, | ||
} | ||
}, | ||
} | ||
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output_node = _get_output_node(source_node["node_id"], operator_version, schema) | ||
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flow = { | ||
"metadata": {"version": 1, "disable_limits": False}, | ||
"nodes": [source_node, output_node], | ||
} | ||
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return flow, f'{output_node["node_id"]}.default' | ||
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def generate_data_ingestion_flow_from_athena_dataset_definition( | ||
input_name: str, | ||
athena_dataset_definition: AthenaDatasetDefinition, | ||
operator_version: str = "0.1", | ||
schema: Dict = None, | ||
): | ||
"""Generate the data ingestion only flow from athena input | ||
|
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Args: | ||
input_name (str): the name of the input to flow source node | ||
athena_dataset_definition (AthenaDatasetDefinition): athena input to flow source node | ||
operator_version: (str): the version of the operator | ||
schema: (typing.Dict): the schema for the data to be ingested | ||
Returns: | ||
dict (typing.Dict): A flow only conduct data ingestion with 1-1 mapping | ||
output_name (str): The output name used to configure | ||
`sagemaker.processing.FeatureStoreOutput` | ||
""" | ||
source_node = { | ||
"node_id": str(uuid4()), | ||
"type": "SOURCE", | ||
"inputs": [], | ||
"outputs": [{"name": "default"}], | ||
"operator": f"sagemaker.athena_source_{operator_version}", | ||
"parameters": { | ||
"dataset_definition": { | ||
"datasetSourceType": "Athena", | ||
"name": input_name, | ||
"catalogName": athena_dataset_definition.catalog, | ||
"databaseName": athena_dataset_definition.database, | ||
"queryString": athena_dataset_definition.query_string, | ||
"s3OutputLocation": athena_dataset_definition.output_s3_uri, | ||
"outputFormat": athena_dataset_definition.output_format, | ||
} | ||
}, | ||
} | ||
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output_node = _get_output_node(source_node["node_id"], operator_version, schema) | ||
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flow = { | ||
"metadata": {"version": 1, "disable_limits": False}, | ||
"nodes": [source_node, output_node], | ||
} | ||
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return flow, f'{output_node["node_id"]}.default' | ||
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def generate_data_ingestion_flow_from_redshift_dataset_definition( | ||
input_name: str, | ||
redshift_dataset_definition: RedshiftDatasetDefinition, | ||
operator_version: str = "0.1", | ||
schema: Dict = None, | ||
): | ||
"""Generate the data ingestion only flow from redshift input | ||
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Args: | ||
input_name (str): the name of the input to flow source node | ||
redshift_dataset_definition (RedshiftDatasetDefinition): redshift input to flow source node | ||
operator_version: (str): the version of the operator | ||
schema: (typing.Dict): the schema for the data to be ingested | ||
Returns: | ||
dict (typing.Dict): A flow only conduct data ingestion with 1-1 mapping | ||
output_name (str): The output name used to configure | ||
`sagemaker.processing.FeatureStoreOutput` | ||
""" | ||
source_node = { | ||
"node_id": str(uuid4()), | ||
"type": "SOURCE", | ||
"inputs": [], | ||
"outputs": [{"name": "default"}], | ||
"operator": f"sagemaker.redshift_source_{operator_version}", | ||
"parameters": { | ||
"dataset_definition": { | ||
"datasetSourceType": "Redshift", | ||
"name": input_name, | ||
"clusterIdentifier": redshift_dataset_definition.cluster_id, | ||
"database": redshift_dataset_definition.database, | ||
"dbUser": redshift_dataset_definition.db_user, | ||
"queryString": redshift_dataset_definition.query_string, | ||
"unloadIamRole": redshift_dataset_definition.cluster_role_arn, | ||
"s3OutputLocation": redshift_dataset_definition.output_s3_uri, | ||
"outputFormat": redshift_dataset_definition.output_format, | ||
} | ||
}, | ||
} | ||
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output_node = _get_output_node(source_node["node_id"], operator_version, schema) | ||
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flow = { | ||
"metadata": {"version": 1, "disable_limits": False}, | ||
"nodes": [source_node, output_node], | ||
} | ||
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return flow, f'{output_node["node_id"]}.default' | ||
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def _get_output_node(source_node_id: str, operator_version: str, schema: Dict): | ||
"""A helper function to generate output node, for internal use only | ||
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Args: | ||
source_node_id (str): source node id | ||
operator_version: (str): the version of the operator | ||
schema: (typing.Dict): the schema for the data to be ingested | ||
Returns: | ||
dict (typing.Dict): output node | ||
""" | ||
return { | ||
"node_id": str(uuid4()), | ||
"type": "TRANSFORM", | ||
"operator": f"sagemaker.spark.infer_and_cast_type_{operator_version}", | ||
"trained_parameters": {} if schema is None else schema, | ||
"parameters": {}, | ||
"inputs": [{"name": "default", "node_id": source_node_id, "output_name": "default"}], | ||
"outputs": [{"name": "default"}], | ||
} |
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M,0.555,0.425,0.13,0.7665,0.264,0.168,0.275,13,1620426219.5977669,b30b290c-7b2f-48cd-9ffe-be6a116e8530 | ||
F,0.4,0.32,0.11,0.353,0.1405,0.0985,0.1,8,1620426219.5977669,e647cabb-86ff-496e-aba4-f3ea33efa663 | ||
F,0.595,0.475,0.17,1.247,0.48,0.225,0.425,20,1620426219.5977669,92c99768-e2d6-41ae-97f5-2519e45ca4c5 | ||
M,0.57,0.48,0.175,1.185,0.474,0.261,0.38,11,1620426219.5977669,c72c1654-e1ae-44e9-a540-a27a9b622495 | ||
F,0.605,0.45,0.195,1.0979999999999999,0.48100000000000004,0.2895,0.315,13,1620426219.5977669,5b633807-e5ee-41a3-aeba-530f2e58d0b0 | ||
F,0.6,0.475,0.15,1.0075,0.4425,0.221,0.28,15,1620426219.5977669,cbc95185-77a7-4baf-aaf0-5487fadf6e96 | ||
M,0.595,0.475,0.14,0.9440000000000001,0.3625,0.18899999999999997,0.315,9,1620426219.5977669,ff87dd10-c5f2-4e37-849c-f42c447b1bde | ||
F,0.6,0.47,0.15,0.922,0.363,0.19399999999999998,0.305,10,1620426219.5977669,21bd37cd-0a1e-4ade-827b-3090f8bde946 | ||
F,0.555,0.425,0.14,0.7879999999999999,0.282,0.1595,0.285,11,1620426219.5977669,685b0b02-b675-4172-b707-0d34e9581265 | ||
F,0.615,0.475,0.17,1.1025,0.4695,0.2355,0.345,14,1620426219.5977669,bad81517-a67d-4863-a852-1f13309d4d4e | ||
F,0.575,0.445,0.14,0.941,0.3845,0.252,0.285,9,1620426219.5977669,62ea15d8-b7cc-4131-9efc-290f7cb2e4f3 | ||
M,0.62,0.51,0.175,1.615,0.5105,0.192,0.675,12,1620426219.5977669,17455749-8733-4586-b6bc-5cb8eb0728ef | ||
F,0.52,0.425,0.165,0.9885,0.396,0.225,0.32,16,1620426219.5977669,6628482c-9b86-42cf-8eb4-4341aaf12406 | ||
M,0.595,0.475,0.16,1.3175,0.408,0.23399999999999999,0.58,21,1620426219.5977669,01509b91-0e5d-4b8e-b593-105504c8d72e | ||
M,0.58,0.45,0.14,1.013,0.38,0.21600000000000005,0.36,14,1620426219.5977669,21de87b8-a3e1-40de-8104-047a4e4bd8ee | ||
F,0.57,0.465,0.18,1.295,0.33899999999999997,0.2225,0.44,12,1620426219.5977669,a568ec6f-3539-438a-9546-ddcecdfcc300 | ||
M,0.625,0.465,0.14,1.195,0.4825,0.205,0.4,13,1620426219.5977669,917e00db-4f54-492f-8e77-d7515f9d8b13 | ||
M,0.56,0.44,0.16,0.8645,0.3305,0.2075,0.26,10,1620426219.5977669,6ced2c2d-2e32-4f93-84c7-bd63a9f960d0 | ||
F,0.46,0.355,0.13,0.517,0.2205,0.114,0.165,9,1620426219.5977669,0aecf615-6812-45e1-847d-6fa0bdd3f361 | ||
F,0.575,0.45,0.16,0.9775,0.3135,0.231,0.33,12,1620426219.5977669,33ed462d-339c-4bab-93d6-8e4fafc9dcc8 | ||
M,0.565,0.425,0.135,0.8115,0.341,0.1675,0.255,15,1620426219.5977669,d07eab87-eeb7-4832-9fed-6b4a3fe60968 | ||
M,0.555,0.44,0.15,0.755,0.307,0.1525,0.26,12,1620426219.5977669,c69de048-e914-4236-b040-898a1fd7026c | ||
M,0.595,0.465,0.175,1.115,0.4015,0.254,0.39,13,1620426219.5977669,119ef6d1-e371-40d5-b2e1-751fdf6a56ff | ||
F,0.625,0.495,0.165,1.262,0.507,0.318,0.39,10,1620426219.5977669,42e078ac-2216-4109-a41f-2abdb33ac25b | ||
M,0.695,0.56,0.19,1.494,0.588,0.3425,0.485,15,1620426219.5977669,89348ada-ebaa-4ff4-b7dd-21fbe6d63e1b | ||
M,0.665,0.535,0.195,1.6059999999999999,0.5755,0.38799999999999996,0.48,14,1620426219.5977669,891dd59e-cd3a-4e67-8b23-b4f4dfcffcc2 | ||
M,0.535,0.435,0.15,0.725,0.26899999999999996,0.1385,0.25,9,1620426219.5977669,e66bedd0-1d39-4973-b5b2-85598f442dcc | ||
M,0.47,0.375,0.13,0.523,0.214,0.132,0.145,8,1620426219.5977669,78068386-0f6a-431e-8fa2-8c306889f793 | ||
M,0.47,0.37,0.13,0.5225,0.201,0.133,0.165,7,1620426219.5977669,e18cd87a-664f-41b9-817f-575899b37834 | ||
F,0.475,0.375,0.125,0.5785,0.2775,0.085,0.155,10,1620426219.5977669,8082fa9d-1f21-4f1d-a29a-774461bc77f2 |
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nit Data Wrangler