regen CWL v1.[01] parsers using custom codgen branches

Author: mr-c

README.rst

@@ -148,13 +148,13 @@ Regenerate parsers
 To regenerate install the ``schema_salad`` package and run:
 
 ``cwl_utils/parser/cwl_v1_0.py`` was created via
-``schema-salad-tool --codegen python https://github.com/common-workflow-language/common-workflow-language/raw/main/v1.0/CommonWorkflowLanguage.yml --codegen-parser-info "org.w3id.cwl.v1_0"``
+``schema-salad-tool --codegen python https://github.com/common-workflow-language/common-workflow-language/raw/codegen/v1.0/CommonWorkflowLanguage.yml --codegen-parser-info "org.w3id.cwl.v1_0" > cwl_utils/parser/cwl_v1_0.py``
 
 ``cwl_utils/parser/cwl_v1_1.py`` was created via
-``schema-salad-tool --codegen python https://github.com/common-workflow-language/cwl-v1.1/raw/main/CommonWorkflowLanguage.yml --codegen-parser-info "org.w3id.cwl.v1_1"``
+``schema-salad-tool --codegen python https://github.com/common-workflow-language/cwl-v1.1/raw/codegen/CommonWorkflowLanguage.yml --codegen-parser-info "org.w3id.cwl.v1_1" > cwl_utils/parser/cwl_v1_1.py``
 
 ``cwl_utils/parser/cwl_v1_2.py`` was created via
-``schema-salad-tool --codegen python https://github.com/common-workflow-language/cwl-v1.2/raw/1.2.1_proposed/CommonWorkflowLanguage.yml --codegen-parser-info "org.w3id.cwl.v1_2"``
+``schema-salad-tool --codegen python https://github.com/common-workflow-language/cwl-v1.2/raw/1.2.1_proposed/CommonWorkflowLanguage.yml --codegen-parser-info "org.w3id.cwl.v1_2" > cwl_utils/parser/cwl_v1_2.py``
 
 Release
 ~~~~~~~

cwl_utils/parser/cwl_v1_0.py

@@ -3759,7 +3759,7 @@ def fromDoc(
             try:
                 default = load_field(
                     _doc.get("default"),
-                    union_of_None_type_or_Any_type,
+                    union_of_None_type_or_FileLoader_or_DirectoryLoader_or_Any_type,
                     baseuri,
                     loadingOptions,
                 )
@@ -6785,7 +6785,7 @@ def fromDoc(
             try:
                 default = load_field(
                     _doc.get("default"),
-                    union_of_None_type_or_Any_type,
+                    union_of_None_type_or_FileLoader_or_DirectoryLoader_or_Any_type,
                     baseuri,
                     loadingOptions,
                 )
@@ -7395,7 +7395,7 @@ def fromDoc(
             try:
                 hints = load_field(
                     _doc.get("hints"),
-                    idmap_hints_union_of_None_type_or_array_of_Any_type,
+                    idmap_hints_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_Any_type,
                     baseuri,
                     loadingOptions,
                 )
@@ -9605,7 +9605,7 @@ def fromDoc(
             try:
                 hints = load_field(
                     _doc.get("hints"),
-                    idmap_hints_union_of_None_type_or_array_of_Any_type,
+                    idmap_hints_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_Any_type,
                     baseuri,
                     loadingOptions,
                 )
@@ -10956,7 +10956,7 @@ class Workflow(Process):
     those steps.  When a step produces output that will be consumed by a
     second step, the first step is a dependency of the second step.
 
-    When there is a dependency, the workflow engine must execute the preceeding
+    When there is a dependency, the workflow engine must execute the preceding
     step and wait for it to successfully produce output before executing the
     dependent step.  If two steps are defined in the workflow graph that
     are not directly or indirectly dependent, these steps are **independent**,
@@ -11130,7 +11130,7 @@ def fromDoc(
             try:
                 hints = load_field(
                     _doc.get("hints"),
-                    idmap_hints_union_of_None_type_or_array_of_Any_type,
+                    idmap_hints_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_Any_type,
                     baseuri,
                     loadingOptions,
                 )
@@ -12241,9 +12241,11 @@ def save(
     False,
     None,
 )
-union_of_None_type_or_Any_type = _UnionLoader(
+union_of_None_type_or_FileLoader_or_DirectoryLoader_or_Any_type = _UnionLoader(
     (
         None_type,
+        FileLoader,
+        DirectoryLoader,
         Any_type,
     )
 )
@@ -12310,15 +12312,36 @@ def save(
     "class",
     "None",
 )
-array_of_Any_type = _ArrayLoader(Any_type)
-union_of_None_type_or_array_of_Any_type = _UnionLoader(
+union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_Any_type = _UnionLoader(
+    (
+        InlineJavascriptRequirementLoader,
+        SchemaDefRequirementLoader,
+        DockerRequirementLoader,
+        SoftwareRequirementLoader,
+        InitialWorkDirRequirementLoader,
+        EnvVarRequirementLoader,
+        ShellCommandRequirementLoader,
+        ResourceRequirementLoader,
+        SubworkflowFeatureRequirementLoader,
+        ScatterFeatureRequirementLoader,
+        MultipleInputFeatureRequirementLoader,
+        StepInputExpressionRequirementLoader,
+        Any_type,
+    )
+)
+array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_Any_type = _ArrayLoader(
+    union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_Any_type
+)
+union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_Any_type = _UnionLoader(
     (
         None_type,
-        array_of_Any_type,
+        array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_Any_type,
     )
 )
-idmap_hints_union_of_None_type_or_array_of_Any_type = _IdMapLoader(
-    union_of_None_type_or_array_of_Any_type, "class", "None"
+idmap_hints_union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_Any_type = _IdMapLoader(
+    union_of_None_type_or_array_of_union_of_InlineJavascriptRequirementLoader_or_SchemaDefRequirementLoader_or_DockerRequirementLoader_or_SoftwareRequirementLoader_or_InitialWorkDirRequirementLoader_or_EnvVarRequirementLoader_or_ShellCommandRequirementLoader_or_ResourceRequirementLoader_or_SubworkflowFeatureRequirementLoader_or_ScatterFeatureRequirementLoader_or_MultipleInputFeatureRequirementLoader_or_StepInputExpressionRequirementLoader_or_Any_type,
+    "class",
+    "None",
 )
 union_of_None_type_or_CWLVersionLoader = _UnionLoader(
     (
@@ -12575,6 +12598,12 @@ def save(
 uri_union_of_None_type_or_strtype_or_array_of_strtype_False_False_2 = _URILoader(
     union_of_None_type_or_strtype_or_array_of_strtype, False, False, 2
 )
+union_of_None_type_or_Any_type = _UnionLoader(
+    (
+        None_type,
+        Any_type,
+    )
+)
 array_of_WorkflowStepInputLoader = _ArrayLoader(WorkflowStepInputLoader)
 idmap_in__array_of_WorkflowStepInputLoader = _IdMapLoader(
     array_of_WorkflowStepInputLoader, "id", "source"
@@ -12599,6 +12628,16 @@ def save(
         None,
     )
 )
+array_of_Any_type = _ArrayLoader(Any_type)
+union_of_None_type_or_array_of_Any_type = _UnionLoader(
+    (
+        None_type,
+        array_of_Any_type,
+    )
+)
+idmap_hints_union_of_None_type_or_array_of_Any_type = _IdMapLoader(
+    union_of_None_type_or_array_of_Any_type, "class", "None"
+)
 union_of_strtype_or_CommandLineToolLoader_or_ExpressionToolLoader_or_WorkflowLoader = (
     _UnionLoader(
         (