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Peter Amstutz
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Merge commit '655f9d8fed71d38a29de22979d260b8473b9a42c' into real-1.0
2 parents fafbdb5 + 655f9d8 commit 3a21447

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cwltool/schemas/v1.0/CommandLineTool.yml

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cwltool/schemas/v1.0/Process.yml

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cwltool/schemas/v1.0/v1.0/binding-test.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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- id: reference

cwltool/schemas/v1.0/v1.0/bwa-mem-tool.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwltool/schemas/v1.0/v1.0/cat1-testcli.cwl

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#!/usr/bin/env cwl-runner
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{
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"class": "CommandLineTool",
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"cwlVersion": "v1.0.dev4",
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"cwlVersion": "v1.0",
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"doc": "Print the contents of a file to stdout using 'cat' running in a docker container.",
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"inputs": [
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{

cwltool/schemas/v1.0/v1.0/cat1-tool.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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class: CommandLineTool
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doc: "Print the contents of a file to stdout using 'cat' running in a docker container."
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hints:

cwltool/schemas/v1.0/v1.0/cat2-tool.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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doc: "Print the contents of a file to stdout using 'cat' running in a docker container."
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DockerRequirement:

cwltool/schemas/v1.0/v1.0/cat3-tool-mediumcut.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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doc: "Print the contents of a file to stdout using 'cat' running in a docker container."
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cwltool/schemas/v1.0/v1.0/cat3-tool-shortcut.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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doc: "Print the contents of a file to stdout using 'cat' running in a docker container."
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cwltool/schemas/v1.0/v1.0/cat3-tool.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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doc: "Print the contents of a file to stdout using 'cat' running in a docker container."
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cwltool/schemas/v1.0/v1.0/cat4-tool.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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cwltool/schemas/v1.0/v1.0/cat5-tool.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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class: CommandLineTool
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doc: "Print the contents of a file to stdout using 'cat' running in a docker container."
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hints:

cwltool/schemas/v1.0/v1.0/conflict-wf.cwl

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$graph:
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- id: echo
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class: CommandLineTool

cwltool/schemas/v1.0/v1.0/count-lines1-wf.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.0
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cwltool/schemas/v1.0/v1.0/count-lines2-wf.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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requirements:
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InlineJavascriptRequirement: {}
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cwltool/schemas/v1.0/v1.0/count-lines3-wf.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.0
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cwltool/schemas/v1.0/v1.0/count-lines4-wf.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.0
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cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.0
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cwltool/schemas/v1.0/v1.0/count-lines6-wf.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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file1: File[]

cwltool/schemas/v1.0/v1.0/count-lines7-wf.cwl

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#!/usr/bin/env cwl-runner
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class: Workflow
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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requirements:
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- class: MultipleInputFeatureRequirement

cwltool/schemas/v1.0/v1.0/count-lines8-wf.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.0
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file1: File

cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl

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#!/usr/bin/env cwl-runner
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inputs: []
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cwltool/schemas/v1.0/v1.0/dir.cwl

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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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requirements:
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- class: ShellCommandRequirement
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cwltool/schemas/v1.0/v1.0/dir2.cwl

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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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hints:
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DockerRequirement:
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dockerPull: debian:8

cwltool/schemas/v1.0/v1.0/dir3.cwl

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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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baseCommand: [tar, xvf]
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inf:

cwltool/schemas/v1.0/v1.0/dir4.cwl

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class: CommandLineTool
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cwlVersion: v1.0
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cwltool/schemas/v1.0/v1.0/dir5.cwl

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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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requirements:
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- class: InitialWorkDirRequirement

cwltool/schemas/v1.0/v1.0/echo-tool.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.0
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in:
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cwltool/schemas/v1.0/v1.0/egrep-stderr-mediumcut.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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doc: "Test of capturing stderr output in a docker container."
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cwltool/schemas/v1.0/v1.0/egrep-stderr-shortcut.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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doc: "Test of capturing stderr output in a docker container."
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cwltool/schemas/v1.0/v1.0/egrep-stderr.cwl

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#!/usr/bin/env cwl-runner
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class: CommandLineTool
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cwlVersion: v1.0.dev4
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cwlVersion: v1.0
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doc: "Test of capturing stderr output in a docker container."
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DockerRequirement:

cwltool/schemas/v1.0/v1.0/env-tool1.cwl

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cwltool/schemas/v1.0/v1.0/env-tool2.cwl

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cwltool/schemas/v1.0/v1.0/env-wf1.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.0
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cwltool/schemas/v1.0/v1.0/env-wf2.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.0
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cwltool/schemas/v1.0/v1.0/formattest.cwl

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$namespaces:
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edam: "http://edamontology.org/"
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class: CommandLineTool
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doc: "Reverse each line using the `rev` command"
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cwltool/schemas/v1.0/v1.0/formattest2.cwl

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$schemas:
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cwlVersion: v1.0
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cwltool/schemas/v1.0/v1.0/formattest3.cwl

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cwltool/schemas/v1.0/v1.0/glob-expr-list.cwl

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cwltool/schemas/v1.0/v1.0/metadata.cwl

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- foaf.rdf
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cwltool/schemas/v1.0/v1.0/null-expression1-tool.cwl

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class: ExpressionTool
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i1:

cwltool/schemas/v1.0/v1.0/null-expression2-tool.cwl

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class: ExpressionTool
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i1: Any

cwltool/schemas/v1.0/v1.0/optional-output.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: "v1.0.dev4"
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cwlVersion: "v1.0"
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cwltool/schemas/v1.0/v1.0/params.cwl

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class: CommandLineTool
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cwlVersion: v1.0
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bar:
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cwltool/schemas/v1.0/v1.0/params2.cwl

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class: CommandLineTool
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cwltool/schemas/v1.0/v1.0/parseInt-tool.cwl

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cwltool/schemas/v1.0/v1.0/record-output.cwl

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- class: ShellCommandRequirement
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cwltool/schemas/v1.0/v1.0/rename.cwl

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cwlVersion: v1.0
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baseCommand: "true"
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cwltool/schemas/v1.0/v1.0/revsort.cwl

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#
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# Requirements & hints specify prerequisites and extensions to the workflow.
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# In this example, DockerRequirement specifies a default Docker container

cwltool/schemas/v1.0/v1.0/revtool.cwl

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# Simplest example command line program wrapper for the Unix tool "rev".
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cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf1.cwl

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cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf2.cwl

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