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If a builder is supplied to single_job_executor - be sure the job uses it.
This was required to get dependency management working with toil - but it looks really ugly so I suspect I am doing something suboptimially.
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cwltool/main.py

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@@ -255,6 +255,7 @@ def output_callback(out, processStatus):
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try:
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for r in jobiter:
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if r:
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r.builder = kwargs.get("builder", None)
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if r.outdir:
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output_dirs.add(r.outdir)
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r.run(**kwargs)

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