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Merge pull request #324 from common-workflow-language/secondaryfiles-array
Add test for secondaryFiles with arrays
2 parents 5e6c2d4 + 1356c45 commit ee3bb1c

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6 files changed

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‎v1.0/conformance_test_v1.0.yaml

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output: {count_output: 16}
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tool: v1.0/count-lines10-wf.cwl
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doc: Test embedded subworkflow
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- job: v1.0/docker-array-secondaryfiles-job.json
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output: {
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"bai_list": {
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"checksum": "sha1$081fc0e57d6efa5f75eeb237aab1d04031132be6",
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"location": "fai.list",
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"class": "File",
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"size": 386
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}
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}
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tool: v1.0/docker-array-secondaryfiles.cwl
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doc: Test secondaryFiles on array of files.

‎v1.0/v1.0/docker-array-secondaryfiles-job.json

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{
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"fasta_path": [
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{
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"class": "File",
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"location": "ref.fasta"
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},
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{
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"class": "File",
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"location": "ref2.fasta"
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}
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]
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}

‎v1.0/v1.0/docker-array-secondaryfiles.cwl

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#!/usr/bin/env cwl-runner
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cwlVersion: v1.0
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requirements:
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- class: DockerRequirement
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dockerPull: debian:8
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- class: InlineJavascriptRequirement
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- class: ShellCommandRequirement
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class: CommandLineTool
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inputs:
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fasta_path:
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type:
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type: array
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items: File
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secondaryFiles:
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- .fai
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outputs:
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bai_list:
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type: File
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outputBinding:
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glob: "fai.list"
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arguments:
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- valueFrom: ${
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var fai_list = "";
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for (var i = 0; i < inputs.fasta_path.length; i ++) {
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fai_list += " cat " + inputs.fasta_path[i].path +".fai" + " >> fai.list && "
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}
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return fai_list.slice(0,-3)
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}
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position: 1
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shellQuote: false
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baseCommand: []

‎v1.0/v1.0/ref.fasta.fai

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0$chr1$9001$11468 2567 19 2567 2568
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1$chr1$53713$55817 2204 2607 2204 2205
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2$chr1$65161$67630 2569 4832 2569 2570
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3$chr1$82792$85041 2349 7422 2349 2350
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4$chr1$98000$100116 2216 9793 2216 2217

‎v1.0/v1.0/ref2.fasta

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>0$chr1$9001$11468
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCCTAACCCTAACCCTAAACCCTAAACCCTAACCCTAACCCTAACCCTAACCCTAACCCCAACCCCAACCCCAACCCCAACCCCAACCCCAACCCTAACCCCTAACCCTAACCCTAACCCTACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCCTAACCCTAACCCTAACCCTAACCCTCGCGGTACCCTCAGCCGGCCCGCCCGCCCGGGTCTGACCTGAGGAGAACTGTGCTCCGCCTTCAGAGTACCACCGAAATCTGTGCAGAGGACAACGCAGCTCCGCCCTCGCGGTGCTCTCCGGGTCTGTGCTGAGGAGAACGCAACTCCGCCGTTGCAAAGGCGCGCCGCGCCGGCGCAGGCGCAGAGAGGCGCGCCGCGCCGGCGCAGGCGCAGAGAGGCGCGCCGCGCCGGCGCAGGCGCAGAGAGGCGCGCCGCGCCGGCGCAGGCGCAGAGAGGCGCGCCGCGCCGGCGCAGGCGCAGAGAGGCGCGCCGCGCCGGCGCAGGCGCAGACACATGCTAGCGCGTCGGGGTGGAGGCGTGGCGCAGGCGCAGAGAGGCGCGCCGCGCCGGCGCAGGCGCAGAGACACATGCTACCGCGTCCAGGGGTGGAGGCGTGGCGCAGGCGCAGAGAGGCGCACCGCGCCGGCGCAGGCGCAGAGACACATGCTAGCGCGTCCAGGGGTGGAGGCGTGGCGCAGGCGCAGAGACGCAAGCCTACGGGCGGGGGTTGGGGGGGCGTGTGTTGCAGGAGCAAAGTCGCACGGCGCCGGGCTGGGGCGGGGGGAGGGTGGCGCCGTGCACGCGCAGAAACTCACGTCACGGTGGCGCGGCGCAGAGACGGGTAGAACCTCAGTAATCCGAAAAGCCGGGATCGACCGCCCCTTGCTTGCAGCCGGGCACTACAGGACCCGCTTGCTCACGGTGCTGTGCCAGGGCGCCCCCTGCTGGCGACTAGGGCAACTGCAGGGCTCTCTTGCTTAGAGTGGTGGCCAGCGCCCCCTGCTGGCGCCGGGGCACTGCAGGGCCCTCTTGCTTACTGTATAGTGGTGGCACGCCGCCTGCTGGCAGCTAGGGACATTGCAGGGTCCTCTTGCTCAAGGTGTAGTGGCAGCACGCCCACCTGCTGGCAGCTGGGGACACTGCCGGGCCCTCTTGCTCCAACAGTACTGGCGGATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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>1$chr1$53713$55817
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATGGAATAAATAAAATGTGAACTTAGGTAAATTATAAATTAATAAAGTATATTTTTAAAATTTCCATTTTAATTTCTGTTTAAATTAGAATAAGAAACAAAAACAACTATGTAATACGTGTGCAAAGCCCTGAACTGAGATTTGACTTTACCTTGAGCTTTGTCAGTTTACGATGCTATTTCAGTTTTGTGCTCAGATTTGAGTGATTGCAGGAAGAGAATAAATTTCTTTAATGCTGTCAAGACTTTAAATAGATACAGACAGAGCATTTTCACTTTTTCCTACATCTCTATTATTCTAAAAATGAGAACATTCCAAAAGTCAACCATCCAAGTTTATTCTAAATAGATGTGTAGAAATAACAGTTGTTTCACAGGAGACTAATCGCCCAAGGATATGTGTTTAGAGGTACTGGTTTCTTAAATAAGGTTTTCTAGTCAGGCAAAAGATTCCCTGGAGCTTATGCATCTGTGGTTGATATTTTGGGATAAGAATAAAGCTAGAAATGGTGAGGCATATTCAATTTCATTGAAGATTTCTGCATTCAAAATAAAAACTCTATTGAAGTTACACATACTTTTTTCATGTATTTGTTTCTACTGCTTTGTAAATTATAACAGCTCAATTAAGAGAAACCGTACCTATGCTATTTTGTCCTGTGATTCTCCAAGAACCTTCCTAAGTTATTCTACTTAATTGCTTTATCACTCATATGAATGGGAATTTCTTCTCTTAATTGCTGCTAATCTCCCCCATCTTCAAATACTCTACCGGGCTTCTGGAACACCACAGCTTCCTGGCTTTTTCTCCTACCTCCTGGGCAAGTCCTTCCCTGTGTCTTTTGTTGAGTGTTCCTCATCTGCTTAACTACCAATCAACCTATTGCCCCTAATTTGATCTTTGGCCTGTTTTCACTTAGATTCTATCCCTACGTATCACCCATTCCCACAGCTTTAATCACCATCTAAACACTAGGGGCTCTCAAACCTTGTATTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTCCTTTTCTTTCCTTTTCTTTCTTTCATTCTTTCTTTCTTTTTTAAGGGGCAGGGTCTCACTATGTTGCTGAGGCTGGTCTCAAACTCCTGACCTCAAGCAATCTGTCTGCTTCAGCCTCCCAAGTAGCTGAGAATACAGGGACAAGCCATTGCACCTGACCCTGGTACTATTTCTTGAGTTCCTGATCCACAGATCTAACCTCCTACTTTCCTGGATGCCACACAAGATCTTCCACTCAACAAGTCTGCAACTAAACTAGCCTTCCTCTTTTCAAACCTACTCTTCTTTCAGTGTTCTCAGTCACAATAATTTGTACCAACTAGTTACCTAGTTGCACAACCCAAAATCTGGGAAAAATAATAGATTTCTTTCTCCATAGTACCCCCAAATCAATAAATCATCAAGTCTTATTCTACCTTCCAAAGAGCCTTACATATGTTCCTTTATTTTCATCTGTAACACCACTATTCCTGTCTAAGCCTACCTATGTCATTTTTGGAAGAGAATATAGTCACCTATGCGACCTTCCCACTTAAAATCCTACTATTTACGCTTCAGTAAAAGAAAAAAAATTTTTAATCTAAGTATGTAATTCTTTTGCTGAAGACACTTCACTTGCTTCTGTGCCCTTAAACTGGTATGTTATCATGGTATAGTAGGCCATCCAAGACCTGGCTTCCTTCCTTTTTTTCAGTCTCAGAGAATAACATACTCTTTCCCTGCAACTCCAGATCCAATTTGGTTTTCTTTTACTTGCCTGGAAACTCCAAAATCTATCAACTCTGGGGCTTTCCACTAGCTAATCATTTTGTATACAATATTTGTCCTTCATGTTTTGCCTCTTAACATCTCAGCTTTCAGTTTCATCATTTTACCAGGGAGGCCTCCCAGAACCTGAGTCCAGAAGAGTTCCTTCCATTGTATATTCCTCTAGCACTACCTATTACCTCTTTTGTAAGACTAACAGCCCTCAAAATTTTTCATTCAGTGATGTCTTCCTCATTGCATTTTAAGTTCAACATGAGCAGGACTTTGTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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>2$chr1$65161$67630
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATCGAAGCATTATTACTTACTCTCTTGTTAACCTATCTGGATTTTAATTTTGTAACTTTATTATATTTGTTTTGCTGTGATTCTTTAAAAAGCACCTTTAGACTCAGTGAGATAGCAAAAATATCCAAATAGGCCAAAAAATTGTGGCAATGTCCTCTCACTCAGGAAAATTCTGTGTGTTTTCTCTAATGGCCAAGGGAAAACTTGTGAGACTATAAAAGTTAGTCTCAGTACACAAAGCTCAGACTGGCTATTCCCAGATCTCTTCAGGTACATCTAGTCCATTCATAAAGGGCTTTTAATTAACCAAGTGGTTTACTAAAAAGGACAATTCACTACATATTATTCTCTTACAGTTTTTATGCCTCATTCTGTGAAAATTGCTGTAGTCTCTTCCAGTTATGAAGAAGGTAGGTGGAAACAAAGACAAAACACATATATTAGAAGAATGAATGAAATTGTAGCATTTTATTGACAATGAGATGGTTCTATTAGTAGGAATCTATTCTGCATAATTCCATTTTGTGTTTACCTTCTGGAAAAATGAAAGGATTCTGTATGGTTAACTTAAATACTTAGAGAAATTAATATGAATAATGTTAGCAAGAATAACCCTTGTTATAAGTATTATGCTGGCAACAATTGTCGAGTCCTCCTCCTCACTCTTCTGGGCTAATTTGTTCTTTTCTCCCCATTTAATAGTCCTTTTCCCCATCTTTCCCCAGGTCCGGTGTTTTCTTACCCACCTCCTTCCCTCCTTTTTATAATACCAGTGAAACTTGGTTTGGAGCATTTCTTTCACATAAAGGTACAAATCATACTGCTAGAGTTGTGAGGATTTTTACAGCTTTTGAAAGAATAAACTCATTTTAAAAACAGGAAAGCTAAGGCCCAGAGATTTTTAAATGATATTCCCATGATCACACTGTGAATTTGTGCCAGAACCCAAATGCCTACTCCCATCTCACTGAGACTTACTATAAGGACATAAGGCATTTATATATATATATATTATATATACTATATATTTATATATATTACATATTATATATATAATATATATTATATAATATATATTATATTATATAATATATAATATAAATATAATATAAATTATATTATATAATATATAATATAAATATAATATAAATTATATAAATATAATATATATTTTATTATATAATATAATATATATTATATAAATATAATATATAAATTATATAATATAATATATATTATATAATATAATATATTTTATTATATAAATATATATTATATTATATAATATATATTTTATTATATAATATATATTATATATTTATAGAATATAATATATATTTTATTATATAATATATATTATATAATATATATTATATTTATATATAACATATATTATTATATAAAATATGTATAATATATATTATATAAATATATTTATATATTATATAAATATATATATTATATATAATTCTAATGGTTGAATTCCAAGAATAATCTATGGCATGAAAGATTTTACCTGTCAACAGTGGCTGGCTCTTCATGGTTGCTACAATGAGTGTGTAAGATTCTGAAGGACTCCTTTAATAAGCCTAAACTTAATGTTCAACTTAGAATAAATACAATTCTTCTAATTTTTTTTGAATAATTTTTAAAAAGTCAGAAATGAGCTTTGAAAGAATTATGGTGGTGAAGGATCCCCTCAGCAGCACAAATTCAGGAGAGAGATGTCTTAACTACGTTAGCAAGAAATTCCTTTTGCTAAAGAATAGCATTCCTGAATTCTTACTAACAGCCATGATAGAAAGTCTTTTGCTACAGATGAGAACCCTCGGGTCAACCTCATCCTTGGCATATTTCATGTGAAGATATAACTTCAAGATTGTCCTTGCCTATCAATGAAATGAATTAATTTTATGTCAATGCATATTTAAGGTCTATTCTAAATTGCACACTTTGATTCAAAAGAAACAGTCCAACCAACCAGTCAGGACAGAAATTATCTCACAATAAAAATCCTATCGTTTGTACTGTCAATGATTAGTATGATTATATTTATTACCGTGCTAAGCAGAAGAGAAATGAAGTGAATGTTCATGATTTATTCCACTATTAGACTTCTCTTTATTCTTAAAAATATTTAAGATCACTAAATTTTTATAGGACTTTAAAAACAGTAATGTGCTGCTTTGAGTGTGTAGGACTAAGAAATGGGATTCAGAGTAGTAAAGAGAAAAGTGGAATTTCCAAGCACTATGAATTACTGTTCTTTAAAAAACAGCAAAAATCAAATAACAGTATTCCTCCAAAAAAGATGGCAAGTGTAAACTCTATACCTTCATGTCTCCCGTGGAATGTTAGTGATCAATTTCCACTTCTCTCTTTTACATCTTACTTGCCCATTAACTCTTATACCTAATCCAAAGATTGTTAATATGGCTATGTCTCACTTTCAGGACACCTTTTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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>3$chr1$82792$85041
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACATCCCACAGTGGGTAACAAAAATAACCTTGAAGAAGGGAAAAATTTGGTTTCCAGAATAAACACATTATAATATCCAAAATGTCCAGTTTTCAACAAAAATTAAGAAGCATGCAAATAAACACAAAACTATGGCCCATTTACAGAAGAAATAAATGAGACTCTCCCTGAGTAAGCAGATATTGAAAATATTAGACAAAAACTTTATATAACTGTCTTAAATAAACTTAAAGAGCTAAAGAAACCCAAGAGAATGACATATAAATAAATAAGAAATATGAATTTTTTTAAAGGTACAAAAAAATTCTGAGGCTGAAAAGTACAATAAGTAAAAAGTTACTTTTTACTTAGGGTTCCAATAGAAGATTTGAGCAGCTGGAAAAAAGAATCAGTGAACTTGATAGATCAAATGAAATGATTCAGTCTGAAGAGCAGGAAAATGAAAGAATGACAACAAAAAAGAATAGAGCCTAAAGACCTGTGTAACAACATCAAGAATGCCTACATACAGAATCCTGGTGGGGAGTGAGGGGCAGGAAGACTATTTGAAGAAATGTGTTTGAAAGCTTCCCAAATTTCACTAAAAACAAATATATACATTCAAAAAGCTCAGTGAACTTCATCAAGGAAATATACAAAGATATTCACACCAAGACACACTATGTTTCAAATTGTCAAAAGGCAAAGCGAATGTTTGAAAGCAGCAAGAGAAAGGCAACGCGTCATTTACAAAGGATCCTCAATAAGTTTGACAGCAGATAGTGCATTATAAGCCATGGATGCCAGAAGAGCTTAGGAAAAAGGCAACGCGTCATTTACAAAGGATCCTCAGTAAGTTTGACAGCAGAGAGCTCATTATAAACCATGGGTGCCAGAAGAGCTTAGGATGACATTTTAAAGTTCTGAAAGAAAAAAACACTGTCAACCAAAAATTCTATAACTTGGAAGATGCCCCTTCAAGTATTAAGGATAAATTACACATTCCCAGATTAAAAAAAAGAAAGAGAGAGAGAGAGAAAGAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAGAAAGAAAGAAAGAAGAAAGAGAAAGAAAGAAAGAAAGAGAGAGAGAAAGAGAGAGAAAGAAAAAGAAGGAAAGAAAGAAAGAAAGAAAAAAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGCAAGCAAGCTTTAAAAGTTCATGTTTGGTAGGCTGTACTTCAAGATACACTTTTAAAAAAAAGACTCCTTCAGATACAAACTAAAAAACACTAGAAAGTAACTCAAAACCACATAAAGAAATAACTCCAGTAAAGATAACTACATAGGTAAATATAAAAGCAATTATCACATTTTTTGTAAGTCTTTTTTAATATTCTATATGTTTTAAAACAAATGTGTAAAATAATGACTATAAATCTATGTTAATGAAGCATGATGTATACAGATGTGGTTTGTGAAATTACCAACATAAAGAAATTCATAGGAAACTAAATAATAATAGAGATTTTGTATACTATTGAAGTTGTTTCAATTTACTCTAAATTGTTCCAAATTAAGAATGTTAATTGTAAATCCCCATGGTAACCACTAAGTTAATATCTTTTGAAAATACAGAAAAGGAAAGCACAGGGTAAACACAGTGATATGCTACAAAATAGCAACTAAACACAAAAGAAGGCGATAATTGAGGAAATTAGGAACAAAGGAGGTATAAGACATACAGAAAACAAAAGCAAAATGGTAGGAGTAAGCCCCTCTTTATCAGTAATTACATTAAATACAAATGAATTAAACTCTCCAATCCAAAGAAAGAGATTAACAGAATGGATTTTTTAAAAATGATCCAACTATATTGTCCACAAGATACTCACTTTAGATCAAAATACACAATGAGTTGAAATGAAAGGATGGGAGAAAATATTCCATGTAAGTAATAACCAAAGGAGATCTGAGGCAAATATACTTATATCAGACAAAATAGACTTTAAGTCAAAAACTGTTACAAAATACAAAGAACAGTATATATTGATTTCAAAATTAATTAAGAAGATATAACAATTATAAATATATGTACACCAACTAACAGGGCTCCAAAATATATAATGTAACCATTGAGAGAATTAAAGGGAGAGACAGACAATTCCACGAAAATTGTTGGGCATTTGAAAACCCAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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>4$chr1$98000$100116
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATGACAGGCAGAGCTCCCTGTTGAGCCACAGAGATTTAGAGAATGGCTGTTAACACAGCATAATCCAGCCCATCCTGACTAATCTGATATTAACATGTATAATAAAGAATTCTATCAATGCTGAGGGAAGATGACTAGTTAAGGTCCTAGGTTGCAAGTCTCAAAACCTCTTCTAAGGATTGTAGACAGGAAATTAAATGACTTCTAGTCCCTAGAGTTCCCAATCTCCTACCATCCCATCCTAATATGACAGAAGTAATTCCTGAGTTGCTTCTGAAACCAGAGCTTCCCTCAGAACCCTTAGCCTGCCAGATGGCTTCTTGGAGAGCCCTCACTCACTTTTCTCCTTCTGCTATTGCTGCTCATTCATTCCAGTTTTTAAAAATTCATCTTTATCCAGGAACCTCGCTTCTAGAAAAGTCATACAGGTGCTTCCAGGAGGCTACATGGGCACCCATATTTTTCTAGCCACTTTCATTAGACCAATGCAGCAGAGAAGAAAAGCCTCAATAATTATTATGACATGGCATGTTAGGATACCAAGTAAATTGCATTTGTAAAATGTGATTTTCTGTTGGTGTTCACTTCAGCTCTACTGACATTTGGTAAGTATTATTGACTGACTGACTAACTAATGTGGTCATTAGTCTTCATAAAGAAAGGCTCTCTACAAAAACGGAGGGATGCCCTTTTTCTGGCATTTAATACGTAAGAAATTGCCTCCAATAGAAACCAGAGTTGCCTGATTACTATCAGCACAGGAGAAATGTATTAATGTGCCTTTCTAGTAACAGGTTTTTAGAAAGTCAAATATAAACAAATCTGTCTATTTGTGTGTGTGCATGTGGTAGTGGGGAGGGAAGAAAAAAGGAGGGGGAGAGAAAGAGAAATAAGAACCAAGTTTATTATACTGTATTCAGGGGGAAAAAATTTTCCCAAGGTCCTAACAGAAGAGCAAAGTGCCACTGTCAATAGCCTCAGTAGTGTTAGGGTTGCTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTCCTTTTTTTTCTTTCTCTTTTTTTCTTCTTTTTTTTTTCTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGGACAGAGTCTCACACTGTCACCTGGGCTGGAGTGCATTGGTGCAATCTCGACTCACTGCAACTTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCGCCCAAGTAGCTGGGATTACAGGTGTCTGCCACCGTGCCTAGCTAATTTTTTTGTATTTTTAGTAGAGATGAGGTTTCACTATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCATGATCCACCCACGTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCCCCTGGCCAGGATTGCTTTTACAGCCAGTCTTCAGGTGCCCACTGTAGGAACAATGTCATTTAACCCTCGGGATTATTCTGTGCCAAATATGGATAATGACTAATATCCAACACAGATATTCTCAGCTCAGAAGAGCAATTAGCAAATTCATAAATTAAGTGCTTGCTTCCTCTTTAGTCAAATACAAACGTTTGTTAAAAGATATTATTTTGCTTTACACTTTTTCTCTCAGAAATAAGCAGATGCTTGAATTCCCACAGTGCTGCTTGAGCCTCACACCATGTCATCCTGCCAGGCACCCAGATCCAGTTCTAGAGTTTCACATGATCGTGAGTGTTGGTTAATAAGTCAATGTGAACTGGGAGGGGAGATTTTTCAGGAGTGCCACAGGGCTCTCCCTTTAATCACATACACTCCCTGCTTTCATTGGAAAGTGTATAATGATGTCAGAGTGCCCCAGAATGGAGCTAGTTGGAAGACTGCCGTCATAGGGATGCCTTAGTGAATTAATAAGGTTTTAATTTCTGGCTCTCAACTTTGTAGATGTAAAAGTTGATTTATCAATATGTGAGAAAGGATGAATCTTTCTGAAGGTTATGTCATCACACTCACTAAGCACACAGAGAATAATGTCTAGAATCTGAGTGCCATGTTATCAAATTGTACTGAGACTCTTGCAGTCACACAGGCTGACATGTAAGCATCGCCATGCCTAGTACAGACTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

‎v1.0/v1.0/ref2.fasta.fai

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0$chr1$9001$11468 2567 19 2567 2568
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1$chr1$53713$55817 2204 2607 2204 2205
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2$chr1$65161$67630 2569 4832 2569 2570
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3$chr1$82792$85041 2349 7422 2349 2350
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4$chr1$98000$100116 2216 9793 2216 2217

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