Fix identifier conflicts (checked by cwltool for the first time) by giving ids

Peter Amstutz · Peter Amstutz · commit fcc593adf187 · 2017-03-27T10:32:36.000-04:00
to embedded tools and workflows.
diff --git a/v1.0/v1.0/count-lines10-wf.cwl b/v1.0/v1.0/count-lines10-wf.cwl
@@ -13,6 +13,7 @@ steps:
     out: [count_output]
     run:
       class: Workflow
+      id: subwf
       inputs:
         file1: File
       outputs:
diff --git a/v1.0/v1.0/count-lines2-wf.cwl b/v1.0/v1.0/count-lines2-wf.cwl
@@ -39,6 +39,7 @@ steps:
     out: [parseInt_output]
     run:
       class: ExpressionTool
+      id: subtool
       inputs:
         parseInt_file1:
           type: File
diff --git a/v1.0/v1.0/scatter-valuefrom-wf1.cwl b/v1.0/v1.0/scatter-valuefrom-wf1.cwl
@@ -35,6 +35,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         first:
           type: string
diff --git a/v1.0/v1.0/scatter-valuefrom-wf5.cwl b/v1.0/v1.0/scatter-valuefrom-wf5.cwl
@@ -35,6 +35,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         first:
           type: string
diff --git a/v1.0/v1.0/scatter-wf1.cwl b/v1.0/v1.0/scatter-wf1.cwl
@@ -19,6 +19,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         echo_in:
           type: string
diff --git a/v1.1.0-dev1/v1.1.0-dev1/count-lines10-wf.cwl b/v1.1.0-dev1/v1.1.0-dev1/count-lines10-wf.cwl
@@ -13,6 +13,7 @@ steps:
     out: [count_output]
     run:
       class: Workflow
+      id: subwf
       inputs:
         file1: File
       outputs:
diff --git a/v1.1.0-dev1/v1.1.0-dev1/count-lines2-wf.cwl b/v1.1.0-dev1/v1.1.0-dev1/count-lines2-wf.cwl
@@ -39,6 +39,7 @@ steps:
     out: [parseInt_output]
     run:
       class: ExpressionTool
+      id: subtool
       inputs:
         parseInt_file1:
           type: File
diff --git a/v1.1.0-dev1/v1.1.0-dev1/scatter-valuefrom-wf1.cwl b/v1.1.0-dev1/v1.1.0-dev1/scatter-valuefrom-wf1.cwl
@@ -35,6 +35,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         first:
           type: string
diff --git a/v1.1.0-dev1/v1.1.0-dev1/scatter-valuefrom-wf5.cwl b/v1.1.0-dev1/v1.1.0-dev1/scatter-valuefrom-wf5.cwl
@@ -35,6 +35,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         first:
           type: string
diff --git a/v1.1.0-dev1/v1.1.0-dev1/scatter-wf1.cwl b/v1.1.0-dev1/v1.1.0-dev1/scatter-wf1.cwl
@@ -19,6 +19,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         echo_in:
           type: string
