Upgrade anyio to v3

Author: mwakaba2

jupyter_server/services/contents/filecheckpoints.py

@@ -14,7 +14,7 @@
 )
 from .fileio import AsyncFileManagerMixin, FileManagerMixin
 
-from anyio import run_sync_in_worker_thread
+from anyio.to_thread import run_sync
 from jupyter_core.utils import ensure_dir_exists
 from traitlets import Unicode
 
@@ -156,7 +156,7 @@ async def restore_checkpoint(self, contents_mgr, checkpoint_id, path):
 
     async def checkpoint_model(self, checkpoint_id, os_path):
         """construct the info dict for a given checkpoint"""
-        stats = await run_sync_in_worker_thread(os.stat, os_path)
+        stats = await run_sync(os.stat, os_path)
         last_modified = tz.utcfromtimestamp(stats.st_mtime)
         info = dict(
             id=checkpoint_id,
@@ -176,7 +176,7 @@ async def rename_checkpoint(self, checkpoint_id, old_path, new_path):
                 new_cp_path,
             )
             with self.perm_to_403():
-                await run_sync_in_worker_thread(shutil.move, old_cp_path, new_cp_path)
+                await run_sync(shutil.move, old_cp_path, new_cp_path)
 
     async def delete_checkpoint(self, checkpoint_id, path):
         """delete a file's checkpoint"""
@@ -187,7 +187,7 @@ async def delete_checkpoint(self, checkpoint_id, path):
 
         self.log.debug("unlinking %s", cp_path)
         with self.perm_to_403():
-            await run_sync_in_worker_thread(os.unlink, cp_path)
+            await run_sync(os.unlink, cp_path)
 
     async def list_checkpoints(self, path):
         """list the checkpoints for a given file

jupyter_server/services/contents/fileio.py

@@ -12,7 +12,7 @@
 import os
 import shutil
 
-from anyio import run_sync_in_worker_thread
+from anyio.to_thread import run_sync
 from tornado.web import HTTPError
 
 from jupyter_server.utils import (
@@ -36,7 +36,7 @@ def replace_file(src, dst):
 async def async_replace_file(src, dst):
     """ replace dst with src asynchronously
     """
-    await run_sync_in_worker_thread(os.replace, src, dst)
+    await run_sync(os.replace, src, dst)
 
 def copy2_safe(src, dst, log=None):
     """copy src to dst
@@ -55,9 +55,9 @@ async def async_copy2_safe(src, dst, log=None):
 
     like shutil.copy2, but log errors in copystat instead of raising
     """
-    await run_sync_in_worker_thread(shutil.copyfile, src, dst)
+    await run_sync(shutil.copyfile, src, dst)
     try:
-        await run_sync_in_worker_thread(shutil.copystat, src, dst)
+        await run_sync(shutil.copystat, src, dst)
     except OSError:
         if log:
             log.debug("copystat on %s failed", dst, exc_info=True)
@@ -355,7 +355,7 @@ async def _read_notebook(self, os_path, as_version=4):
         """Read a notebook from an os path."""
         with self.open(os_path, 'r', encoding='utf-8') as f:
             try:
-                return await run_sync_in_worker_thread(partial(nbformat.read, as_version=as_version), f)
+                return await run_sync(partial(nbformat.read, as_version=as_version), f)
             except Exception as e:
                 e_orig = e
 
@@ -379,7 +379,7 @@ async def _read_notebook(self, os_path, as_version=4):
     async def _save_notebook(self, os_path, nb):
         """Save a notebook to an os_path."""
         with self.atomic_writing(os_path, encoding='utf-8') as f:
-            await run_sync_in_worker_thread(partial(nbformat.write, version=nbformat.NO_CONVERT), nb, f)
+            await run_sync(partial(nbformat.write, version=nbformat.NO_CONVERT), nb, f)
 
     async def _read_file(self, os_path, format):
         """Read a non-notebook file.
@@ -394,7 +394,7 @@ async def _read_file(self, os_path, format):
             raise HTTPError(400, "Cannot read non-file %s" % os_path)
 
         with self.open(os_path, 'rb') as f:
-            bcontent = await run_sync_in_worker_thread(f.read)
+            bcontent = await run_sync(f.read)
 
         if format is None or format == 'text':
             # Try to interpret as unicode if format is unknown or if unicode
@@ -429,4 +429,4 @@ async def _save_file(self, os_path, content, format):
             ) from e
 
         with self.atomic_writing(os_path, text=False) as f:
-            await run_sync_in_worker_thread(f.write, bcontent)
+            await run_sync(f.write, bcontent)

jupyter_server/services/contents/filemanager.py

@@ -12,7 +12,7 @@
 import mimetypes
 import nbformat
 
-from anyio import run_sync_in_worker_thread
+from anyio.to_thread import run_sync
 from send2trash import send2trash
 from tornado import web
 
@@ -578,7 +578,7 @@ async def _dir_model(self, path, content=True):
         if content:
             model['content'] = contents = []
             os_dir = self._get_os_path(path)
-            dir_contents = await run_sync_in_worker_thread(os.listdir, os_dir)
+            dir_contents = await run_sync(os.listdir, os_dir)
             for name in dir_contents:
                 try:
                     os_path = os.path.join(os_dir, name)
@@ -588,7 +588,7 @@ async def _dir_model(self, path, content=True):
                     continue
 
                 try:
-                    st = await run_sync_in_worker_thread(os.lstat, os_path)
+                    st = await run_sync(os.lstat, os_path)
                 except OSError as e:
                     # skip over broken symlinks in listing
                     if e.errno == errno.ENOENT:
@@ -721,7 +721,7 @@ async def _save_directory(self, os_path, model, path=''):
             raise web.HTTPError(400, u'Cannot create hidden directory %r' % os_path)
         if not os.path.exists(os_path):
             with self.perm_to_403():
-                await run_sync_in_worker_thread(os.mkdir, os_path)
+                await run_sync(os.mkdir, os_path)
         elif not os.path.isdir(os_path):
             raise web.HTTPError(400, u'Not a directory: %s' % (os_path))
         else:
@@ -791,16 +791,16 @@ async def _check_trash(os_path):
             # It's a bit more nuanced than this, but until we can better
             # distinguish errors from send2trash, assume that we can only trash
             # files on the same partition as the home directory.
-            file_dev = (await run_sync_in_worker_thread(os.stat, os_path)).st_dev
-            home_dev = (await run_sync_in_worker_thread(os.stat, os.path.expanduser('~'))).st_dev
+            file_dev = (await run_sync(os.stat, os_path)).st_dev
+            home_dev = (await run_sync(os.stat, os.path.expanduser('~'))).st_dev
             return file_dev == home_dev
 
         async def is_non_empty_dir(os_path):
             if os.path.isdir(os_path):
                 # A directory containing only leftover checkpoints is
                 # considered empty.
                 cp_dir = getattr(self.checkpoints, 'checkpoint_dir', None)
-                dir_contents = set(await run_sync_in_worker_thread(os.listdir, os_path))
+                dir_contents = set(await run_sync(os.listdir, os_path))
                 if dir_contents - {cp_dir}:
                     return True
 
@@ -828,11 +828,11 @@ async def is_non_empty_dir(os_path):
                 raise web.HTTPError(400, u'Directory %s not empty' % os_path)
             self.log.debug("Removing directory %s", os_path)
             with self.perm_to_403():
-                await run_sync_in_worker_thread(shutil.rmtree, os_path)
+                await run_sync(shutil.rmtree, os_path)
         else:
             self.log.debug("Unlinking file %s", os_path)
             with self.perm_to_403():
-                await run_sync_in_worker_thread(rm, os_path)
+                await run_sync(rm, os_path)
 
     async def rename_file(self, old_path, new_path):
         """Rename a file."""
@@ -851,7 +851,7 @@ async def rename_file(self, old_path, new_path):
         # Move the file
         try:
             with self.perm_to_403():
-                await run_sync_in_worker_thread(shutil.move, old_os_path, new_os_path)
+                await run_sync(shutil.move, old_os_path, new_os_path)
         except web.HTTPError:
             raise
         except Exception as e:

jupyter_server/services/contents/largefilemanager.py

@@ -1,4 +1,4 @@
-from anyio import run_sync_in_worker_thread
+from anyio.to_thread import run_sync
 from tornado import web
 import base64
 import os, io
@@ -135,6 +135,6 @@ async def _save_large_file(self, os_path, content, format):
             if os.path.islink(os_path):
                 os_path = os.path.join(os.path.dirname(os_path), os.readlink(os_path))
             with io.open(os_path, 'ab') as f:
-                await run_sync_in_worker_thread(f.write, bcontent)
+                await run_sync(f.write, bcontent)
 
 

jupyter_server/tests/services/contents/test_manager.py

@@ -23,7 +23,7 @@ def jp_contents_manager(request, tmp_path):
 
 
 @pytest.fixture(params=[FileContentsManager, AsyncFileContentsManager])
-def file_contents_manager_class(request, tmp_path):
+def jp_file_contents_manager_class(request, tmp_path):
     return request.param
 
 # -------------- Functions ----------------------------
@@ -100,46 +100,45 @@ async def check_populated_dir_files(jp_contents_manager, api_path):
 # ----------------- Tests ----------------------------------
 
 
-def test_root_dir(file_contents_manager_class, tmp_path):
-    fm = file_contents_manager_class(root_dir=str(tmp_path))
+def test_root_dir(jp_file_contents_manager_class, tmp_path):
+    fm = jp_file_contents_manager_class(root_dir=str(tmp_path))
     assert fm.root_dir == str(tmp_path)
 
 
-def test_missing_root_dir(file_contents_manager_class, tmp_path):
+def test_missing_root_dir(jp_file_contents_manager_class, tmp_path):
     root = tmp_path / 'notebook' / 'dir' / 'is' / 'missing'
     with pytest.raises(TraitError):
-        file_contents_manager_class(root_dir=str(root))
+        jp_file_contents_manager_class(root_dir=str(root))
 
 
-def test_invalid_root_dir(file_contents_manager_class, tmp_path):
+def test_invalid_root_dir(jp_file_contents_manager_class, tmp_path):
     temp_file = tmp_path / 'file.txt'
     temp_file.write_text('')
     with pytest.raises(TraitError):
-       file_contents_manager_class(root_dir=str(temp_file))
+       jp_file_contents_manager_class(root_dir=str(temp_file))
 
-
-def test_get_os_path(file_contents_manager_class, tmp_path):
-    fm = file_contents_manager_class(root_dir=str(tmp_path))
+def test_get_os_path(jp_file_contents_manager_class, tmp_path):
+    fm = jp_file_contents_manager_class(root_dir=str(tmp_path))
     path = fm._get_os_path('/path/to/notebook/test.ipynb')
     rel_path_list =  '/path/to/notebook/test.ipynb'.split('/')
     fs_path = os.path.join(fm.root_dir, *rel_path_list)
     assert path == fs_path
 
-    fm = file_contents_manager_class(root_dir=str(tmp_path))
+    fm = jp_file_contents_manager_class(root_dir=str(tmp_path))
     path = fm._get_os_path('test.ipynb')
     fs_path = os.path.join(fm.root_dir, 'test.ipynb')
     assert path == fs_path
 
-    fm = file_contents_manager_class(root_dir=str(tmp_path))
+    fm = jp_file_contents_manager_class(root_dir=str(tmp_path))
     path = fm._get_os_path('////test.ipynb')
     fs_path = os.path.join(fm.root_dir, 'test.ipynb')
     assert path == fs_path
 
 
-def test_checkpoint_subdir(file_contents_manager_class, tmp_path):
+def test_checkpoint_subdir(jp_file_contents_manager_class, tmp_path):
     subd = 'sub ∂ir'
     cp_name = 'test-cp.ipynb'
-    fm = file_contents_manager_class(root_dir=str(tmp_path))
+    fm = jp_file_contents_manager_class(root_dir=str(tmp_path))
     tmp_path.joinpath(subd).mkdir()
     cpm = fm.checkpoints
     cp_dir = cpm.checkpoint_path('cp', 'test.ipynb')
@@ -148,10 +147,10 @@ def test_checkpoint_subdir(file_contents_manager_class, tmp_path):
     assert cp_dir == os.path.join(str(tmp_path), cpm.checkpoint_dir, cp_name)
 
 
-async def test_bad_symlink(file_contents_manager_class, tmp_path):
+async def test_bad_symlink(jp_file_contents_manager_class, tmp_path):
     td = str(tmp_path)
 
-    cm = file_contents_manager_class(root_dir=td)
+    cm = jp_file_contents_manager_class(root_dir=td)
     path = 'test bad symlink'
     _make_dir(cm, path)
 
@@ -173,10 +172,10 @@ async def test_bad_symlink(file_contents_manager_class, tmp_path):
     sys.platform.startswith('win'),
     reason="Windows doesn't detect symlink loops"
 )
-async def test_recursive_symlink(file_contents_manager_class, tmp_path):
+async def test_recursive_symlink(jp_file_contents_manager_class, tmp_path):
     td = str(tmp_path)
 
-    cm = file_contents_manager_class(root_dir=td)
+    cm = jp_file_contents_manager_class(root_dir=td)
     path = 'test recursive symlink'
     _make_dir(cm, path)
 
@@ -195,9 +194,9 @@ async def test_recursive_symlink(file_contents_manager_class, tmp_path):
     assert 'recursive' not in contents
 
 
-async def test_good_symlink(file_contents_manager_class, tmp_path):
+async def test_good_symlink(jp_file_contents_manager_class, tmp_path):
     td = str(tmp_path)
-    cm = file_contents_manager_class(root_dir=td)
+    cm = jp_file_contents_manager_class(root_dir=td)
     parent = 'test good symlink'
     name = 'good symlink'
     path = '{0}/{1}'.format(parent, name)
@@ -216,13 +215,13 @@ async def test_good_symlink(file_contents_manager_class, tmp_path):
     sys.platform.startswith('win'),
     reason="Can't test permissions on Windows"
 )
-async def test_403(file_contents_manager_class, tmp_path):
+async def test_403(jp_file_contents_manager_class, tmp_path):
     if hasattr(os, 'getuid'):
         if os.getuid() == 0:
             raise pytest.skip("Can't test permissions as root")
 
     td = str(tmp_path)
-    cm = file_contents_manager_class(root_dir=td)
+    cm = jp_file_contents_manager_class(root_dir=td)
     model = await ensure_async(cm.new_untitled(type='file'))
     os_path = cm._get_os_path(model['path'])
 
@@ -233,10 +232,9 @@ async def test_403(file_contents_manager_class, tmp_path):
     except HTTPError as e:
         assert e.status_code == 403
 
-
-async def test_escape_root(file_contents_manager_class, tmp_path):
+async def test_escape_root(jp_file_contents_manager_class, tmp_path):
     td = str(tmp_path)
-    cm = file_contents_manager_class(root_dir=td)
+    cm = jp_file_contents_manager_class(root_dir=td)
     # make foo, bar next to root
     with open(os.path.join(cm.root_dir, '..', 'foo'), 'w') as f:
         f.write('foo')

setup.cfg

@@ -42,7 +42,7 @@ install_requires =
     terminado>=0.8.3
     prometheus_client
     pywin32>=1.0 ; sys_platform == 'win32'
-    anyio>=2.0.2,<3
+    anyio>=3.0.1,<4
 
 [options.extras_require]
 test = coverage; pytest; pytest-cov; pytest-mock; requests; pytest-tornasync; pytest-console-scripts; ipykernel