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lines changed Original file line number Diff line number Diff line change @@ -93,7 +93,10 @@ functions:
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export UPLOAD_BUCKET="$UPLOAD_BUCKET"
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export PROJECT_DIRECTORY="$PROJECT_DIRECTORY"
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- export TMPDIR="$MONGO_ORCHESTRATION_HOME/db"
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+ # TMPDIR cannot be too long, see
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+ # https://github.com/broadinstitute/cromwell/issues/3647.
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+ # Why is it even set at all?
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+ #export TMPDIR="$MONGO_ORCHESTRATION_HOME/db"
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export PATH="$MONGODB_BINARIES:$PATH"
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export PROJECT="${project}"
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export ATLAS_REPLICA_SET_URI="${atlas_replica_set_uri}"
Original file line number Diff line number Diff line change @@ -93,7 +93,10 @@ functions:
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export UPLOAD_BUCKET="$UPLOAD_BUCKET"
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export PROJECT_DIRECTORY="$PROJECT_DIRECTORY"
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- export TMPDIR="$MONGO_ORCHESTRATION_HOME/db"
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+ # TMPDIR cannot be too long, see
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+ # https://github.com/broadinstitute/cromwell/issues/3647.
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+ # Why is it even set at all?
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+ #export TMPDIR="$MONGO_ORCHESTRATION_HOME/db"
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export PATH="$MONGODB_BINARIES:$PATH"
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export PROJECT="${project}"
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Original file line number Diff line number Diff line change @@ -96,7 +96,10 @@ functions:
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export UPLOAD_BUCKET="$UPLOAD_BUCKET"
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export PROJECT_DIRECTORY="$PROJECT_DIRECTORY"
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- export TMPDIR="$MONGO_ORCHESTRATION_HOME/db"
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+ # TMPDIR cannot be too long, see
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+ # https://github.com/broadinstitute/cromwell/issues/3647.
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+ # Why is it even set at all?
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+ #export TMPDIR="$MONGO_ORCHESTRATION_HOME/db"
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export PATH="$MONGODB_BINARIES:$PATH"
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export PROJECT="${project}"
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export ATLAS_REPLICA_SET_URI="${atlas_replica_set_uri}"
@@ -157,7 +160,10 @@ functions:
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export UPLOAD_BUCKET="$UPLOAD_BUCKET"
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export PROJECT_DIRECTORY="$PROJECT_DIRECTORY"
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- export TMPDIR="$MONGO_ORCHESTRATION_HOME/db"
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+ # TMPDIR cannot be too long, see
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+ # https://github.com/broadinstitute/cromwell/issues/3647.
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+ # Why is it even set at all?
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+ #export TMPDIR="$MONGO_ORCHESTRATION_HOME/db"
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export PATH="$MONGODB_BINARIES:$PATH"
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export PROJECT="${project}"
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