No such file or directory: 'result_bidssrc.pklz'

[ebeanato]

Hello everyone,

Summary

I am running fmriprep on a remote server.

Actual behavior

During running, I have several time the same error:

"
Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

Node: fmriprep_wf.single_subject_p001_wf.bids_info
Interface: niworkflows.interfaces.bids.BIDSInfo
Traceback:
Traceback (most recent call last):

File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
cached, updated = self.procs[jobid].is_cached()

File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
hashed_inputs, hashvalue = self._get_hashval()

File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
self._get_inputs()

File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
outputs = _load_resultfile(results_file)[0].outputs

File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 300, in load_resultfile
result = loadpkl(results_file)

File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 687, in loadpkl
pkl_file = pklopen(infile.name, 'rb')

File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
binary_file = GzipFile(filename, gz_mode, compresslevel)

File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in init
fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')

FileNotFoundError: [Errno 2] No such file or directory: 'result_bidssrc.pklz'
"

Script/Workflow details

The main command is: docker run --rm -e DOCKER_VERSION_8395080871=19.03.2 -v /opt/freesurfer/license.txt:/opt/freesurfer/license.txt:ro -v /path_to_data:/data:ro -v /path_to_data_output:/out poldracklab/fmriprep:1.5.0 /data /out participant --participant_label sub-p001 --fs-no-reconall

Thank you very much in advance!

[effigies]

Sorry, I responded before I saw this was in the fMRIPrep context. Please try using fmriprep 1.5.1rc2.

[ebeanato]

I am sorry for the late reply.
I tested now the new version by running:

docker run --rm -e DOCKER_VERSION_8395080871=19.03.2 -v /opt/freesurfer/license.txt:/opt/freesurfer/license.txt:ro -v /data/subjects/pilots/TI:/data:ro -v /data/subjects/pilots/TI:/out poldracklab/fmriprep:1.5.1rc2 /data /out participant --participant_label sub-p001 --fs-no-reconall

And it worked, I have no more this error appearing.

Thank you!!