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yaowang1111 opened this issue Oct 26, 2019 · 2 comments
Closed

bug report #3082

yaowang1111 opened this issue Oct 26, 2019 · 2 comments

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@yaowang1111
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When i set the mean_vol of FSL MCFLIRT to TRUE, the program reports following:
traits.trait_errors.TraitError: The trait 'mean_img' of a MCFLIRTOutputSpec instance is an existing file name, but the path '/gpfs/share/home/1801110663/project/alexithymia/icaFIX/work_preproc/_subject_id_L100/mcflirt/006_merged_mcf.nii.gz_mean_reg.nii.gz' does not exist.

However there is a file named '/gpfs/share/home/1801110663/project/alexithymia/icaFIX/work_preproc/_subject_id_L100/mcflirt/006_merged_mcf_mean_reg.nii.gz'

I guess there is something wrong with the naming system in this part.
@effigies
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Duplicate of #2925. This should be fixed in nipype 1.2.3. However, there are some other issues with that release, so I would recommend upgrading to >=1.3.0rc1.

@yaowang1111
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Solved my problem,Thanks

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@effigies @yaowang1111