Edits

Author: pollfly

experiment_management/unet_segmentation_3d_ignite_clearml.ipynb

@@ -28,59 +28,25 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "id": "VUefxTkGGTAc"
-   },
    "source": [
     "## Setup environment\n",
     "\n",
     "`clearml` comes as part of the `monai[all]` installation. For more information about integrating ClearML into your Monai code, see [here](https://clear.ml/docs/latest/docs/integrations/monai). For more information about using ClearML (experiment management, data management, pipelines, model serving, and more), see [ClearML's official documentation](https://clear.ml/docs/latest/docs/)."
-   ]
+   ],
+   "metadata": {
+    "collapsed": false
+   }
   },
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "id": "OUMIxMjvGTAd"
-   },
    "outputs": [],
    "source": [
     "!python -c \"import monai\" || pip install -q \"monai-weekly[ignite, nibabel, tensorboard, clearml]\""
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {
-    "id": "s-ORDi_qZTYM"
-   },
-   "source": [
-    "### Set up ClearML ⚓\n",
-    "\n",
-    "1. To keep track of your experiments and/or data, ClearML needs to communicate to a server. You have 2 server options:\n",
-    "\n",
-    "  * Sign up for free to the [ClearML Hosted Service](https://app.clear.ml/)\n",
-    "  * Set up your own server, see [here](https://clear.ml/docs/latest/docs/deploying_clearml/clearml_server).\n",
-    "\n",
-    "\n",
-    "\n",
-    "2. Add you ClearML credentials below. ClearML will use these credentials to connect to your server (see instructions for generating credentials [here](https://clear.ml/docs/latest/docs/getting_started/ds/ds_first_steps/#jupyter-notebook))."
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
+   ],
    "metadata": {
-    "id": "ofvwifHWG0SK"
-   },
-   "outputs": [],
-   "source": [
-    "# clearml credentials\n",
-    "%env CLEARML_WEB_HOST=''\n",
-    "%env CLEARML_API_HOST=''\n",
-    "%env CLEARML_FILES_HOST=''\n",
-    "%env CLEARML_API_ACCESS_KEY=''\n",
-    "%env CLEARML_API_SECRET_KEY=''\n"
-   ]
+    "collapsed": false
+   }
   },
   {
    "cell_type": "markdown",
@@ -102,7 +68,6 @@
     "import glob\n",
     "import logging\n",
     "import os\n",
-    "from pathlib import Path\n",
     "import shutil\n",
     "import sys\n",
     "import tempfile\n",
@@ -136,6 +101,38 @@
     "print_config()"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "source": [
+    "## Set up ClearML ⚓\n",
+    "\n",
+    "1. To keep track of your experiments and/or data, ClearML needs to communicate to a server. You have 2 server options:\n",
+    "\n",
+    "  * Sign up for free to the [ClearML Hosted Service](https://app.clear.ml/)\n",
+    "  * Set up your own server, see [here](https://clear.ml/docs/latest/docs/deploying_clearml/clearml_server).\n",
+    "\n",
+    "2. Add you ClearML credentials below. ClearML will use these credentials to connect to your server (see instructions for generating credentials [here](https://clear.ml/docs/latest/docs/getting_started/ds/ds_first_steps/#jupyter-notebook))."
+   ],
+   "metadata": {
+    "collapsed": false
+   }
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "outputs": [],
+   "source": [
+    "# clearml credentials\n",
+    "%env CLEARML_WEB_HOST=''\n",
+    "%env CLEARML_API_HOST=''\n",
+    "%env CLEARML_FILES_HOST=''\n",
+    "%env CLEARML_API_ACCESS_KEY=''\n",
+    "%env CLEARML_API_SECRET_KEY=''\n"
+   ],
+   "metadata": {
+    "collapsed": false
+   }
+  },
   {
    "cell_type": "markdown",
    "metadata": {