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notebooks/paper_reproducibility/03_annotate_visium_cell2location.ipynb

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" # 10X reaction / sample / batch\n",
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" # batch_key='dataset',\n",
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" # cell type, covariate used for constructing signatures\n",
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" labels_key=\"celltype_major\"\n",
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" labels_key=\"celltype_major\",\n",
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" # multiplicative technical effects (platform, 3' vs 5', donor effect)\n",
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" # categorical_covariate_keys=['Method']\n",
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")"

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