disabled logging from ome_zarr

Author: LucaMarconato

notebooks/developers_resources/storage_format/multiple_elements.ipynb

@@ -124,22 +124,28 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 12,
    "id": "b2952c64-5502-4462-9be0-a32fdb61158c",
    "metadata": {},
    "outputs": [
     {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "no parent found for <ome_zarr.reader.Label object at 0x281846ec0>: None\n",
-      "no parent found for <ome_zarr.reader.Label object at 0x2818661d0>: None\n",
-      "no parent found for <ome_zarr.reader.Label object at 0x286e48df0>: None\n",
-      "no parent found for <ome_zarr.reader.Label object at 0x286e4a560>: None\n"
+     "ename": "AssertionError",
+     "evalue": "",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+      "\u001b[0;31mAssertionError\u001b[0m                            Traceback (most recent call last)",
+      "Cell \u001b[0;32mIn[12], line 3\u001b[0m\n\u001b[1;32m      1\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01mlogging\u001b[39;00m\n\u001b[1;32m      2\u001b[0m logging\u001b[38;5;241m.\u001b[39mgetLogger(\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mome_zarr\u001b[39m\u001b[38;5;124m'\u001b[39m)\u001b[38;5;241m.\u001b[39msetLevel(logging\u001b[38;5;241m.\u001b[39mERROR)\n\u001b[0;32m----> 3\u001b[0m \u001b[43mwrite_sdata_and_check_consistency\u001b[49m\u001b[43m(\u001b[49m\u001b[43msdata\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43msdata\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mname\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mNAME\u001b[49m\u001b[43m)\u001b[49m\n",
+      "File \u001b[0;32m~/embl/projects/basel/spatialdata-notebooks/notebooks/developers_resources/storage_format/io_utils.py:84\u001b[0m, in \u001b[0;36mwrite_sdata_and_check_consistency\u001b[0;34m(sdata, name)\u001b[0m\n\u001b[1;32m     59\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m     60\u001b[0m \u001b[38;5;124;03mWrite SpatialData instance to file, reload it, and check for consistency.\u001b[39;00m\n\u001b[1;32m     61\u001b[0m \n\u001b[0;32m   (...)\u001b[0m\n\u001b[1;32m     81\u001b[0m \u001b[38;5;124;03m>>> write_sdata_and_check_consistency(sdata, 'testfile') # will create testfile.zarr\u001b[39;00m\n\u001b[1;32m     82\u001b[0m \u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m     83\u001b[0m f1 \u001b[38;5;241m=\u001b[39m \u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;132;01m{\u001b[39;00mname\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m.zarr\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[0;32m---> 84\u001b[0m \u001b[38;5;28;01massert\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m os\u001b[38;5;241m.\u001b[39mpath\u001b[38;5;241m.\u001b[39mexists(f1)\n\u001b[1;32m     85\u001b[0m sdata\u001b[38;5;241m.\u001b[39mwrite(f1)\n\u001b[1;32m     87\u001b[0m \u001b[38;5;28;01mwith\u001b[39;00m tempfile\u001b[38;5;241m.\u001b[39mTemporaryDirectory() \u001b[38;5;28;01mas\u001b[39;00m tmpdir:\n",
+      "\u001b[0;31mAssertionError\u001b[0m: "
      ]
     }
    ],
    "source": [
+    "import logging\n",
+    "\n",
+    "logging.getLogger(\"ome_zarr\").setLevel(logging.ERROR)\n",
+    "\n",
     "write_sdata_and_check_consistency(sdata=sdata, name=NAME)"
    ]
   },