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[pre-commit.ci] auto fixes from pre-commit.com hooks
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‎.github/codecov.yml

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# Based on pydata/xarray
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codecov:
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require_ci_to_pass: false
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require_ci_to_pass: false
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coverage:
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status:
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project:
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default:
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# Require 1% coverage, i.e., always succeed
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target: 1
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patch: false
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changes: false
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status:
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project:
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default:
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# Require 1% coverage, i.e., always succeed
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target: 1
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patch: false
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changes: false
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comment:
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layout: "diff, flags, files"
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behavior: once
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require_base: false
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layout: "diff, flags, files"
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behavior: once
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require_base: false
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fixes:
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- "/spatialdata-plot/spatialdata-plot/::spatialdata-plot/src/spatialdat_plot/"
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- "/spatialdata-plot/spatialdata-plot/::spatialdata-plot/src/spatialdat_plot/"

‎.github/workflows/build.yaml

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name: Check Build
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on:
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push:
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branches: [main]
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pull_request:
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branches: [main]
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push:
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branches: [main]
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pull_request:
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branches: [main]
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jobs:
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package:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python 3.10
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uses: actions/setup-python@v2
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with:
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python-version: "3.10"
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- name: Install build dependencies
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run: python -m pip install --upgrade pip wheel twine build
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- name: Build package
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run: python -m build
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- name: Check package
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run: twine check --strict dist/*.whl
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package:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python 3.10
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uses: actions/setup-python@v2
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with:
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python-version: "3.10"
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- name: Install build dependencies
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run: python -m pip install --upgrade pip wheel twine build
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- name: Build package
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run: python -m build
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- name: Check package
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run: twine check --strict dist/*.whl

‎.github/workflows/test_and_deploy.yaml

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name: Test
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on:
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push:
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branches: [main]
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tags:
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- "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
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pull_request:
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branches: [main]
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push:
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branches: [main]
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tags:
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- "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
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pull_request:
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branches: [main]
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jobs:
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test:
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runs-on: ${{ matrix.os }}
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defaults:
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run:
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shell: bash -e {0} # -e to fail on error
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test:
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runs-on: ${{ matrix.os }}
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defaults:
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run:
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shell: bash -e {0} # -e to fail on error
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strategy:
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fail-fast: false
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matrix:
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python: ["3.9", "3.10"]
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os: [ubuntu-latest]
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strategy:
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fail-fast: false
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matrix:
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python: ["3.9", "3.10"]
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os: [ubuntu-latest]
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env:
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OS: ${{ matrix.os }}
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PYTHON: ${{ matrix.python }}
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env:
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OS: ${{ matrix.os }}
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PYTHON: ${{ matrix.python }}
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steps:
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- uses: actions/checkout@v3
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- name: Set up Python ${{ matrix.python }}
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uses: actions/setup-python@v3
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with:
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python-version: ${{ matrix.python }}
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steps:
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- uses: actions/checkout@v3
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- name: Set up Python ${{ matrix.python }}
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uses: actions/setup-python@v3
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with:
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python-version: ${{ matrix.python }}
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- name: Get pip cache dir
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id: pip-cache-dir
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run: |
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echo "::set-output name=dir::$(pip cache dir)"
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- name: Restore pip cache
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uses: actions/cache@v3
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with:
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path: ${{ steps.pip-cache-dir.outputs.dir }}
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key: pip-${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('**/pyproject.toml') }}
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restore-keys: |
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pip-${{ runner.os }}-${{ env.pythonLocation }}-
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- name: Install test dependencies
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run: |
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python -m pip install --upgrade pip wheel
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pip install pytest-cov
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- name: Install dependencies
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run: |
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pip install -e ".[dev,test]"
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- name: Test
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env:
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MPLBACKEND: agg
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PLATFORM: ${{ matrix.os }}
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DISPLAY: :42
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run: |
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pytest -v --cov --color=yes --cov-report=xml
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# - name: Generate GH action "groundtruth" figures as artifacts, uncomment if needed
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# if: always()
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# uses: actions/upload-artifact@v3
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# with:
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# name: groundtruth-figures
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# path: /home/runner/work/spatialdata-plot/spatialdata-plot/tests/_images/*
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- name: Archive figures generated during testing
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if: always()
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uses: actions/upload-artifact@v3
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with:
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name: plotting-results
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path: /home/runner/work/spatialdata-plot/spatialdata-plot/tests/figures/*
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- name: Upload coverage to Codecov
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uses: codecov/codecov-action@v3
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with:
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token: ${{ secrets.CODECOV_TOKEN }}
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fail_ci_if_error: true # optional (default = false)
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verbose: true # optional (default = false)
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deploy:
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# this will run when you have tagged a commit, starting with "v*"
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# and requires that you have put your twine API key in your
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# github secrets (see readme for details)
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needs: [test]
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runs-on: ubuntu-latest
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if: contains(github.ref, 'tags')
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steps:
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- name: Checkout code
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uses: actions/checkout@v3
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- name: Get pip cache dir
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id: pip-cache-dir
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run: |
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echo "::set-output name=dir::$(pip cache dir)"
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- name: Restore pip cache
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uses: actions/cache@v3
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with:
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path: ${{ steps.pip-cache-dir.outputs.dir }}
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key: pip-${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('**/pyproject.toml') }}
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restore-keys: |
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pip-${{ runner.os }}-${{ env.pythonLocation }}-
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- name: Install test dependencies
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run: |
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python -m pip install --upgrade pip wheel
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pip install pytest-cov
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- name: Install dependencies
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run: |
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pip install -e ".[dev,test]"
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- name: Test
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env:
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MPLBACKEND: agg
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PLATFORM: ${{ matrix.os }}
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DISPLAY: :42
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run: |
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pytest -v --cov --color=yes --cov-report=xml
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# - name: Generate GH action "groundtruth" figures as artifacts, uncomment if needed
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# if: always()
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# uses: actions/upload-artifact@v3
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# with:
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# name: groundtruth-figures
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# path: /home/runner/work/spatialdata-plot/spatialdata-plot/tests/_images/*
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- name: Archive figures generated during testing
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if: always()
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uses: actions/upload-artifact@v3
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with:
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name: plotting-results
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path: /home/runner/work/spatialdata-plot/spatialdata-plot/tests/figures/*
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- name: Upload coverage to Codecov
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uses: codecov/codecov-action@v3
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with:
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token: ${{ secrets.CODECOV_TOKEN }}
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fail_ci_if_error: true # optional (default = false)
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verbose: true # optional (default = false)
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deploy:
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# this will run when you have tagged a commit, starting with "v*"
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# and requires that you have put your twine API key in your
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# github secrets (see readme for details)
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needs: [test]
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runs-on: ubuntu-latest
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if: contains(github.ref, 'tags')
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steps:
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- name: Checkout code
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uses: actions/checkout@v3
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- name: Set up Python 3.10
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uses: actions/setup-python@v4
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with:
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python-version: "3.10"
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- name: Set up Python 3.10
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uses: actions/setup-python@v4
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with:
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python-version: "3.10"
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- name: Install hatch
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run: pip install hatch
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- name: Install hatch
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run: pip install hatch
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- name: Build project for distribution
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run: hatch build
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- name: Build project for distribution
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run: hatch build
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- name: Publish a Python distribution to PyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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password: ${{ secrets.PYPI_API_TOKEN }}
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- name: Publish a Python distribution to PyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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password: ${{ secrets.PYPI_API_TOKEN }}

‎.pre-commit-config.yaml

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fail_fast: false
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default_language_version:
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python: python3
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python: python3
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default_stages:
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- commit
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- push
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- commit
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- push
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minimum_pre_commit_version: 2.16.0
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ci:
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skip: []
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skip: []
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repos:
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- repo: https://github.com/psf/black
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rev: 23.11.0
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hooks:
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- id: black
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- repo: https://github.com/pre-commit/mirrors-prettier
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rev: v3.1.0
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hooks:
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- id: prettier
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- repo: https://github.com/asottile/blacken-docs
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rev: 1.16.0
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hooks:
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- id: blacken-docs
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- repo: https://github.com/pre-commit/mirrors-mypy
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rev: v1.7.0
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hooks:
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- id: mypy
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additional_dependencies: [numpy, types-requests]
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exclude: tests/|docs/
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- repo: https://github.com/astral-sh/ruff-pre-commit
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rev: v0.1.6
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hooks:
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- id: ruff
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args: [--fix, --exit-non-zero-on-fix]
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- repo: https://github.com/psf/black
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rev: 23.11.0
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hooks:
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- id: black
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- repo: https://github.com/pre-commit/mirrors-prettier
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rev: v3.1.0
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hooks:
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- id: prettier
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- repo: https://github.com/asottile/blacken-docs
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rev: 1.16.0
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hooks:
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- id: blacken-docs
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- repo: https://github.com/pre-commit/mirrors-mypy
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rev: v1.7.0
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hooks:
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- id: mypy
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additional_dependencies: [numpy, types-requests]
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exclude: tests/|docs/
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- repo: https://github.com/astral-sh/ruff-pre-commit
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rev: v0.1.6
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hooks:
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- id: ruff
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args: [--fix, --exit-non-zero-on-fix]

‎.readthedocs.yaml

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# https://docs.readthedocs.io/en/stable/config-file/v2.html
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version: 2
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build:
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os: ubuntu-20.04
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tools:
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python: "3.10"
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os: ubuntu-20.04
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tools:
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python: "3.10"
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sphinx:
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configuration: docs/conf.py
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fail_on_warning: false
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configuration: docs/conf.py
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fail_on_warning: false
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python:
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install:
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- method: pip
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path: .
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extra_requirements:
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- docs
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install:
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- method: pip
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path: .
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extra_requirements:
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- docs

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