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CHANGELOG.md

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@@ -12,167 +12,169 @@ and this project adheres to [Semantic Versioning][].
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### Fixed
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15-
- Transformations of Points and Shapes are now applied before rendering with datashader (#378)
16-
- Fix bug due to `sc.get.obs_df()` returning a different type (#393)
15+
- Transformations of Points and Shapes are now applied before rendering with datashader (#378)
16+
- Fix bug due to `sc.get.obs_df()` returning a different type (#393)
17+
- Allowing instance mismatch between shapes and tables (#396)
18+
- Fix bug when plotting categorical points with datashader (#395)
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## [0.2.8] - 2024-11-26
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2022
### Changed
2123

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- Support for `xarray.DataTree` (which moved from `datatree.DataTree`) (#380)
24+
- Support for `xarray.DataTree` (which moved from `datatree.DataTree`) (#380)
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## [0.2.7] - 2024-10-24
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### Added
2729

28-
- The user can now specify `datashader_reduction` to control the rendering behavior (#309)
29-
- Rendering outlines of shapes with datashader works now (#309)
30+
- The user can now specify `datashader_reduction` to control the rendering behavior (#309)
31+
- Rendering outlines of shapes with datashader works now (#309)
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3133
### Fixed
3234

33-
- datashader now uses canvas size = image size which speeds up the rendering (#309)
34-
- datashader now uses the `linear` as interpolation method for colormaps instead of the default `eq_hist` to make it equivalent to matplotlib (#309)
35-
- point sizes of datashader now agree with matplotlib also when dpi != 100 (#309)
36-
- Giving a custom colormap when rendering a multiscale image now works (#586)
35+
- datashader now uses canvas size = image size which speeds up the rendering (#309)
36+
- datashader now uses the `linear` as interpolation method for colormaps instead of the default `eq_hist` to make it equivalent to matplotlib (#309)
37+
- point sizes of datashader now agree with matplotlib also when dpi != 100 (#309)
38+
- Giving a custom colormap when rendering a multiscale image now works (#586)
3739

3840
## [0.2.6] - 2024-09-04
3941

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### Changed
4143

42-
- Lowered RMSE-threshold for plot-based tests from 45 to 15 (#344)
43-
- When subsetting to `groups`, `NA` isn't automatically added to legend (#344)
44-
- When rendering a single image channel, a colorbar is now shown (#346)
45-
- Removed `percentiles_for_norm` parameter (#346)
46-
- Changed `norm` to no longer accept bools, only `mpl.colors.Normalise` or `None` (#346)
44+
- Lowered RMSE-threshold for plot-based tests from 45 to 15 (#344)
45+
- When subsetting to `groups`, `NA` isn't automatically added to legend (#344)
46+
- When rendering a single image channel, a colorbar is now shown (#346)
47+
- Removed `percentiles_for_norm` parameter (#346)
48+
- Changed `norm` to no longer accept bools, only `mpl.colors.Normalise` or `None` (#346)
4749

4850
### Fixed
4951

50-
- Filtering with `groups` now preserves original cmap (#344)
51-
- Non-selected `groups` are now not shown in `na_color` (#344)
52-
- Several issues associated with `norm` and `colorbar` (#346)
52+
- Filtering with `groups` now preserves original cmap (#344)
53+
- Non-selected `groups` are now not shown in `na_color` (#344)
54+
- Several issues associated with `norm` and `colorbar` (#346)
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5456
## [0.2.5] - 2024-08-23
5557

5658
### Changed
5759

58-
- Replaced `outline` parameter in `render_labels` with alpha-based logic (#323)
59-
- Lowered RMSE-threshold for plot-based tests from 60 to 45 (#323)
60-
- Removed `preprocessing` (.pp) accessor (#329)
60+
- Replaced `outline` parameter in `render_labels` with alpha-based logic (#323)
61+
- Lowered RMSE-threshold for plot-based tests from 60 to 45 (#323)
62+
- Removed `preprocessing` (.pp) accessor (#329)
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### Fixed
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64-
- Minor fixes for several tests as a result of the threshold change (#323)
66+
- Minor fixes for several tests as a result of the threshold change (#323)
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## [0.2.4] - 2024-08-07
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### Added
6971

70-
- Added utils function for 0-transparent cmaps (#302)
72+
- Added utils function for 0-transparent cmaps (#302)
7173

7274
### Fixed
7375

74-
- Took RNG out of categorical label test (#306)
75-
- Performance bug when plotting shapes (#298)
76-
- scale parameter was ignored for single-scale images (#301)
77-
- Changes to support for dask-expr (#283)
78-
- Added error handling for non-existent elements (#305)
79-
- Specifying vmin and vmax properly clips image data (#307)
80-
- import bug `get_cmap()` (8fd969c)
76+
- Took RNG out of categorical label test (#306)
77+
- Performance bug when plotting shapes (#298)
78+
- scale parameter was ignored for single-scale images (#301)
79+
- Changes to support for dask-expr (#283)
80+
- Added error handling for non-existent elements (#305)
81+
- Specifying vmin and vmax properly clips image data (#307)
82+
- import bug `get_cmap()` (8fd969c)
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## [0.2.3] - 2024-07-03
8385

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### Added
8587

86-
- Datashader support for points and shapes (#244)
88+
- Datashader support for points and shapes (#244)
8789

8890
### Changed
8991

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- All parameters are now provided for a single element (#272)
92+
- All parameters are now provided for a single element (#272)
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### Fixed
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94-
- Fix color assignment for NaN values (#257)
95-
- Zorder of rendering now strictly follows the order of the render_x calls (#244)
96+
- Fix color assignment for NaN values (#257)
97+
- Zorder of rendering now strictly follows the order of the render_x calls (#244)
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9799
## [0.2.2] - 2024-05-02
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### Fixed
100102

101-
- Fixed `fill_alpha` ignoring `alpha` channel from custom cmap (#236)
102-
- Fix channel str support (#221)
103+
- Fixed `fill_alpha` ignoring `alpha` channel from custom cmap (#236)
104+
- Fix channel str support (#221)
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## [0.2.1] - 2024-03-26
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### Minor
107109

108-
- Adjusted GitHub worklows
110+
- Adjusted GitHub worklows
109111

110112
## [0.2.0] - 2024-03-24
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### Added
113115

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- Support for plotting multiple tables @melonora
116+
- Support for plotting multiple tables @melonora
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116118
### Fixed
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- Several bugfixes, especially for colors and palettes @melonora
120+
- Several bugfixes, especially for colors and palettes @melonora
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## [0.1.0] - 2024-01-17
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### Added
123125

124-
- Multiscale image handling: user can specify a scale, else the best scale is selected automatically given the figure size and dpi (#164)
125-
- Large images are automatically rasterized to speed up performance (#164)
126-
- Added better error message for mismatch in cs and ax number (#185)
127-
- Beter test coverage for correct plotting of elements after transformation (#198)
128-
- Can now stack render commands (#190, #192)
129-
- The `color` argument in render_shapes/points now accepts actual colors as well (#199)
130-
- Input arguments are now evaulated for their types in basic.py (#199)
126+
- Multiscale image handling: user can specify a scale, else the best scale is selected automatically given the figure size and dpi (#164)
127+
- Large images are automatically rasterized to speed up performance (#164)
128+
- Added better error message for mismatch in cs and ax number (#185)
129+
- Beter test coverage for correct plotting of elements after transformation (#198)
130+
- Can now stack render commands (#190, #192)
131+
- The `color` argument in render_shapes/points now accepts actual colors as well (#199)
132+
- Input arguments are now evaulated for their types in basic.py (#199)
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132134
### Fixed
133135

134-
- Now dropping index when plotting shapes after spatial query (#177)
135-
- Points are now being correctly rotated (#198)
136-
- User can now pass Colormap objects to the cmap argument in render_images. When only one cmap is given for 3 channels, it is now applied to each channel (#188, #194)
136+
- Now dropping index when plotting shapes after spatial query (#177)
137+
- Points are now being correctly rotated (#198)
138+
- User can now pass Colormap objects to the cmap argument in render_images. When only one cmap is given for 3 channels, it is now applied to each channel (#188, #194)
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138140
## [0.0.6] - 2023-11-06
139141

140142
### Added
141143

142-
- Pushed `get_extent` functionality upstream to `spatialdata` (#162)
144+
- Pushed `get_extent` functionality upstream to `spatialdata` (#162)
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144146
## [0.0.5] - 2023-10-02
145147

146148
### Added
147149

148-
- Can now scale shapes (#152)
149-
- Can now plot columns from GeoDataFrame (#149)
150+
- Can now scale shapes (#152)
151+
- Can now plot columns from GeoDataFrame (#149)
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151153
### Fixed
152154

153-
- Multipolygons are now handled correctly (#93)
154-
- Legend order is now deterministic (#143)
155-
- Images no longer normalised by default (#150)
156-
- Filtering of shapes and points using the `groups` argument is now possible, coloring by palette and cmap arguments works for shapes and points (#153)
157-
- Colorbar no longer autoscales to [0, 1] (#155)
158-
- Plotting shapes after a spatial query is now possible (#163)
155+
- Multipolygons are now handled correctly (#93)
156+
- Legend order is now deterministic (#143)
157+
- Images no longer normalised by default (#150)
158+
- Filtering of shapes and points using the `groups` argument is now possible, coloring by palette and cmap arguments works for shapes and points (#153)
159+
- Colorbar no longer autoscales to [0, 1] (#155)
160+
- Plotting shapes after a spatial query is now possible (#163)
159161

160162
## [0.0.4] - 2023-08-11
161163

162164
### Fixed
163165

164-
- Multi-scale images/labels are now correctly substituted and the action is logged (#131).
165-
- Empty geometries among the shapes can be handeled (#133).
166-
- `outline_width` parameter in render_shapes is now a float that actually determines the line width (#139).
166+
- Multi-scale images/labels are now correctly substituted and the action is logged (#131).
167+
- Empty geometries among the shapes can be handeled (#133).
168+
- `outline_width` parameter in render_shapes is now a float that actually determines the line width (#139).
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168170
## [0.0.2] - 2023-06-25
169171

170172
### Fixed
171173

172-
- Multiple bugfixes of which I didn't keep track of.
174+
- Multiple bugfixes of which I didn't keep track of.
173175

174176
## [0.0.1] - 2023-04-04
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176178
### Added
177179

178-
- Initial release of `spatialdata-plot` with support for `images`, `labels`, `points` and `shapes`.
180+
- Initial release of `spatialdata-plot` with support for `images`, `labels`, `points` and `shapes`.

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