[wasm] sync update-checkout-config.json

Author: kateinoigakukun

utils/update_checkout/update-checkout-config.json

@@ -103,7 +103,7 @@
                 "swift-atomics": "1.0.2",
                 "swift-collections": "1.0.1",
                 "swift-crypto": "2.5.0",
-                "swift-certificates": "0.4.0",
+                "swift-certificates": "0.6.0",
                 "swift-asn1": "0.8.0",
                 "swift-driver": "main",
                 "swift-numerics": "1.0.1",