update nypm to support text-based bun lockfiles

Author: nicktrn

packages/cli-v3/package.json

@@ -109,7 +109,7 @@
     "magicast": "^0.3.4",
     "minimatch": "^10.0.1",
     "mlly": "^1.7.1",
-    "nypm": "^0.3.9",
+    "nypm": "^0.5.4",
     "object-hash": "^3.0.0",
     "open": "^10.0.3",
     "p-limit": "^6.2.0",