sm2

Signed-off-by: myron <[email protected]>

Author: myron

auto3dseg/tasks/kits23/input.yaml

@@ -1,4 +1,4 @@
-# KiTS23 Auto3dseg minimal user input
+# KiTS23 Auto3DSeg user input
 
 modality: CT                        # primary modality
 dataroot: /data/kits23              # dataset location
@@ -8,20 +8,20 @@ class_names:                        # names for tensorboard, and label index gro
   - { name: mass, index: [2,3] }
   - { name: tumor, index: [2] }
 
+# OPTIONAL
 # use final sigmoid activation (instead of the default softmax), since KiTS regions are overlapping (multi-label segmentation)
 # this is optional to set, the system auto-detects overlapping labels automatically.
 sigmoid: true 
 
-
 # the config below is optional, but it explicitly sets params as it was used during KiTS23 challenge
-# otherwise, the defaults are (auto_scale_allowed is True) and the system will attempt to guess these settings according to the available GPU (e.g. make batch size larger) 
+# otherwise, the defaults are used, auto_scale_allowed is True and the system will attempt to guess these settings according to the available GPU (e.g. make batch size larger) 
 auto_scale_allowed: false
-roi_size: [256, 256, 256]
 num_epochs: 600
-loss: {_target_: DiceLoss}
+resample: true
+resample_resolution: [0.78125, 0.78125, 0.78125] 
+# roi_size: [256, 256, 256]
+# roi_size: [336, 336, 336]
+# loss: {_target_: DiceLoss}
 # batch_size: 1
-# resample: true
-# resample_resolution: [0.78125, 0.78125, 0.78125] # this is auto determined, uncomment to set another value manually
-
-
+# augment_mode: ct_ax_1