Update notebooks of acceleration and performance

[dongyang0122]

Update notebooks of acceleration and performance.

Description

Update notebooks of acceleration and performance.

acceleration/automatic_mixed_precision.ipynb
acceleration/dataset_type_performance.ipynb
acceleration/fast_training_tutorial.ipynb

performance_profiling

Checks

• Avoid including large-size files in the PR.
• Clean up long text outputs from code cells in the notebook.
• For security purposes, please check the contents and remove any sensitive info such as user names and private key.
• Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
• Notebook runs automatically ./runner.sh -t <path to .ipynb file>

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[mingxin-zheng]

As mentioned above, dataset_type_performance and fast_training_tutorial notebooks also have the following issues:

• Copyright needs to match the guidline template
• Colab links shouldn't be removed
• "## Check environment" should be "## Setup Environment"
• the pip install shell commands should be there, and the nvidia-smi should be removed.

Thanks!

[Nic-Ma]

Hi @dongyang0122 ,

Could you please help also update the guide document as all the related content are updated to A100?
https://github.com/Project-MONAI/tutorials/blob/main/acceleration/fast_model_training_guide.md

Thanks in advance.

[dongyang0122]

Hi @dongyang0122 ,

Could you please help also update the guide document as all the related content are updated to A100? https://github.com/Project-MONAI/tutorials/blob/main/acceleration/fast_model_training_guide.md

Thanks in advance.

@Nic-Ma sure, I am working on it now.

[mingxin-zheng]

Hi @dongyang0122 , there is a minor error that needs to be fixed. Everything else looks good to me:

Running ./acceleration/automatic_mixed_precision.ipynb
Checking PEP8 compliance...
stdin:462:1: E305 expected 2 blank lines after class or function definition, found 1
plt.set_loglevel('WARNING')
^
Error: Try running with autofixes: --autofix.

Check failed!

Update: I pushed a small commit to add the extra blank line in 99bd068.

[dongyang0122]

Hi @dongyang0122 ,
Could you please help also update the guide document as all the related content are updated to A100? https://github.com/Project-MONAI/tutorials/blob/main/acceleration/fast_model_training_guide.md
Thanks in advance.

@Nic-Ma sure, I am working on it now.

Hi @Nic-Ma, I have updated the guide document with A100 results.