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Jun 7, 2023
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d157990
add tutorial/demo of modular patch inference
bhashemian Apr 17, 2023
2362667
change folder name
bhashemian Apr 17, 2023
144d40f
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 17, 2023
75559a5
Merge branch 'main' into patch_inferer
bhashemian Apr 17, 2023
2a6cc79
Merge branch 'main' into patch_inferer
bhashemian Apr 20, 2023
25d7a63
update with changes in core
bhashemian May 19, 2023
f052b90
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] May 19, 2023
bea6cfa
Merge branch 'main' into patch_inferer
bhashemian May 30, 2023
f818561
finalize notebook
bhashemian May 30, 2023
db010d2
Merge branch 'patch_inferer' of https://github.com/drbeh/tutorials in…
bhashemian May 30, 2023
954fe03
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] May 30, 2023
5c9dd65
formatting
bhashemian May 30, 2023
8f73816
add environment
bhashemian May 30, 2023
0f782bd
Merge branch 'patch_inferer' of https://github.com/drbeh/tutorials in…
bhashemian May 30, 2023
94cc10a
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] May 30, 2023
07a4a5d
replace functions from test
bhashemian May 30, 2023
bce4afd
Merge branch 'patch_inferer' of https://github.com/drbeh/tutorials in…
bhashemian May 30, 2023
5bf9511
change env
bhashemian May 30, 2023
87b887b
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] May 30, 2023
23b577b
fix a typo
bhashemian May 31, 2023
604f430
add patch inference diagram
bhashemian May 31, 2023
c4e6f8a
addressed reviews
bhashemian Jun 5, 2023
2996be8
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 5, 2023
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remove redundant f-strings
bhashemian Jun 5, 2023
aa21b6a
Merge branch 'patch_inferer' of https://github.com/drbeh/tutorials in…
bhashemian Jun 5, 2023
276fec9
Merge branch 'main' into patch_inferer
bhashemian Jun 6, 2023
579017e
change from openslide to cucim
bhashemian Jun 7, 2023
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568 changes: 568 additions & 0 deletions patch_inferer/modular_patch_inferer.ipynb

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1 change: 1 addition & 0 deletions runner.sh
Original file line number Diff line number Diff line change
Expand Up @@ -69,6 +69,7 @@ doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" lazy_resampling_fun
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" lazy_resampling_compose.ipynb)
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" TensorRT_inference_acceleration.ipynb)
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" lazy_resampling_benchmark.ipynb)
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" modular_patch_inferer.ipynb)

# Execution of the notebook in these folders / with the filename cannot be automated
skip_run_papermill=()
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