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1,003 changes: 1,003 additions & 0 deletions 3d_registration/learn2reg_oasis_unpaired_brain_mr.ipynb

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3 changes: 3 additions & 0 deletions README.md
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Expand Up @@ -118,6 +118,9 @@ This notebook shows a quick demo for learning based affine registration of `64 x
##### [3D registration using paired lung CT](./3d_registration/paired_lung_ct.ipynb)
This tutorial shows how to use MONAI to register lung CT volumes acquired at different time points for a single patient.

##### [3D registration using unpaired brain MR](./3d_registration/learn2reg_oasis_unpaired_brain_mr.ipynb)
This tutorial shows how to get started on using the general-purpose registration framework `VoxelMorph` offered in MONAI to register unpaired brain MR volumes.

##### [DeepAtlas](./deep_atlas/deep_atlas_tutorial.ipynb)
This tutorial demonstrates the use of MONAI for training of registration and segmentation models _together_. The DeepAtlas approach, in which the two models serve as a source of weakly supervised learning for each other, is useful in situations where one has many unlabeled images and just a few images with segmentation labels. The notebook works with 3D images from the OASIS-1 brain MRI dataset.

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