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Fix broken link in swin-unetr notebook #1862

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Oct 13, 2024
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Fix broken link in swin-unetr notebook #1862

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4 changes: 1 addition & 3 deletions 3d_segmentation/swin_unetr_btcv_segmentation_3d.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@
"\n",
"For this tutorial, the dataset needs to be downloaded from: https://www.synapse.org/#!Synapse:syn3193805/wiki/217752. More details are provided in the \"Download dataset\" section below.\n",
"\n",
"In addition, the json file for data splits needs to be downloaded from this [link](https://drive.google.com/file/d/1qcGh41p-rI3H_sQ0JwOAhNiQSXriQqGi/view?usp=sharing). Once downloaded, place the json file in the same folder as the dataset. \n",
"In addition, the json file for data splits needs to be downloaded from this [link](https://developer.download.nvidia.com/assets/Clara/monai/tutorials/swin_unetr_btcv_dataset_0.json). Once downloaded, place the json file in the same folder as the dataset. \n",
"\n",
"For BTCV dataset, under Institutional Review Board (IRB) supervision, 50 abdomen CT scans of were randomly selected from a combination of an ongoing colorectal cancer chemotherapy trial, and a retrospective ventral hernia study. The 50 scans were captured during portal venous contrast phase with variable volume sizes (512 x 512 x 85 - 512 x 512 x 198) and field of views (approx. 280 x 280 x 280 mm3 - 500 x 500 x 650 mm3). The in-plane resolution varies from 0.54 x 0.54 mm2 to 0.98 x 0.98 mm2, while the slice thickness ranges from 2.5 mm to 5.0 mm. \n",
"\n",
Expand Down Expand Up @@ -98,8 +98,6 @@
"\n",
"We use weights from self-supervised pre-training of Swin UNETR encoder (3D Swin Tranformer) on a cohort of 5050 CT scans from publicly available datasets. The encoder is pre-trained using reconstructin, rotation prediction and contrastive learning pre-text tasks as shown below. For more details, please refer to [1] (CVPR paper) and see this [repository](https://github.com/Project-MONAI/research-contributions/tree/main/SwinUNETR/Pretrain). \n",
"\n",
"![image](https://lh3.googleusercontent.com/pw/AM-JKLVLgduGZ9naCSasWg09U665NBdd3UD4eLTy15wJiwbmKLS_p5WSZ2MBcRePEJO2tv9X3TkC52MsbnomuPy5JT3vSVeCji1MOEuAzcsxily88TdbHuAt6PzccefwKupbXyOCumK5hzz5Ul38kZnlEQ84=w397-h410-no?authuser=2)\n",
"\n",
"Please download the pre-trained weights from this [link](https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/model_swinvit.pt) and place it in the root directory of this tutorial. \n",
"\n",
"If training from scratch is desired, please skip the step for initializing from pre-trained weights. "
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