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initial reference implementation for Breast Density FL Challenge #680

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Merged
merged 3 commits into from
May 4, 2022

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holgerroth
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Fixes # n/a.

Description

Reference implementation for
ACR-NVIDIA-NCI Breast Density FL challenge.

Held in conjunction with MICCAI 2022.

We provide a minimal example of how to implement Federated Averaging using NVFlare 2.0 and MONAI to train
a breast density prediction model with ResNet18.

Status

Ready

Checks

n/a

@holgerroth holgerroth requested review from wyli and yiheng-wang-nv May 2, 2022 20:42
@holgerroth holgerroth force-pushed the breast_density_fl_challenge branch from 58a563e to 71d9351 Compare May 2, 2022 20:52
@Nic-Ma
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Nic-Ma commented May 3, 2022

I feel the JSON dataset files are big, maybe better to put them in our Google Drive?
@wyli What do you think?

Thanks.

@holgerroth
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I feel the JSON dataset files are big, maybe better to put them in our Google Drive? @wyli What do you think?

Thanks.

I could compress them and ask user to unzip.

fixes pre-commit ci

Signed-off-by: Wenqi Li <[email protected]>

fix typo

remove data lists and example predictions

add download script and instructions

keep empty results folder
@holgerroth holgerroth force-pushed the breast_density_fl_challenge branch from 3a2ee12 to b5839fd Compare May 4, 2022 15:34
@holgerroth
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@Nic-Ma @wyli I updated the PR with the requested changes.

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@wyli wyli left a comment

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Thanks, it looks good to me. (some minor comments inline)

@wyli wyli enabled auto-merge (squash) May 4, 2022 16:19
@wyli wyli merged commit ff586e0 into Project-MONAI:master May 4, 2022
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
…ject-MONAI#680)

* initial reference implementation for Breast Density FL Challenge
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3 participants