Update tumor detection pipline with new components #697
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Signed-off-by: Behrooz <[email protected]>
5 tasks
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
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Hi @drbeh , Do you also need to update the code under Thanks. |
Hey @Nic-Ma, yes of course. All the tumor detection tutorials need to be updated. |
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
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Check out this pull request on See visual diffs & provide feedback on Jupyter Notebooks. Powered by ReviewNB |
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
This was
linked to
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May 16, 2022
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
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@Nic-Ma this pipeline is already tested by @ZiyueXu77 and FROC is maintained (~0.7). |
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Hi @drbeh , Could you please help remove the 2 CSV files from the PR? It makes the PR around 200000 lines change. Thanks. |
Signed-off-by: Behrooz <[email protected]>
Hi @Nic-Ma, |
boneseva
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to boneseva/MONAI-tutorials
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Apr 21, 2024
* Update tumor detection pipline with new components Signed-off-by: Behrooz <[email protected]> * formatting Signed-off-by: Behrooz <[email protected]> * formatting Signed-off-by: Behrooz <[email protected]> * Add sub dataset Signed-off-by: Behrooz <[email protected]> * Convert xxxD transforms to xxxd Signed-off-by: Behrooz <[email protected]> * Update pipline with nvtx annotation Signed-off-by: Behrooz <[email protected]> * Add transforms to validation Signed-off-by: Behrooz <[email protected]> * Update tumor notebook Signed-off-by: Behrooz <[email protected]> * Update torch-based pipeline Signed-off-by: Behrooz <[email protected]> * Update perfomance profiling code Signed-off-by: Behrooz <[email protected]> * Update grid shape Signed-off-by: Behrooz <[email protected]> * Update Signed-off-by: Behrooz <[email protected]> * Update a comment Signed-off-by: Behrooz <[email protected]> * Update training/validation dataset and their links Signed-off-by: Behrooz <[email protected]> * Fix image path Signed-off-by: Behrooz <[email protected]> * Change to validate by default Signed-off-by: Behrooz <[email protected]> * Flip back the location dims Signed-off-by: Behrooz <[email protected]> * Add filtered datasets Signed-off-by: Behrooz <[email protected]> * Update csv loading Signed-off-by: Behrooz <[email protected]> * Update validation defaults Signed-off-by: Behrooz <[email protected]> * Remove csv files Signed-off-by: Behrooz <[email protected]> Co-authored-by: Nic Ma <[email protected]>
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Fixes #636
Description
Updates the ignite-based tumor detection pipeline that uses numpy and pytorch tensors with the new components in MONAI.
Status
Ready
Checks
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