update to TileDB 2.28.0 #818
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| name: TileDB-Java | |
| on: | |
| workflow_dispatch: | |
| push: | |
| tags: | |
| - '*' | |
| branches: | |
| - master | |
| - test-* | |
| pull_request: | |
| jobs: | |
| Test_Windows: | |
| runs-on: windows-2019 | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| - name: assemble | |
| uses: gradle/[email protected] | |
| with: | |
| arguments: assemble | |
| - name: test | |
| uses: gradle/[email protected] | |
| with: | |
| arguments: test | |
| env: | |
| ORG_GRADLE_PROJECT_TILEDB_SERIALIZATION: OFF | |
| ORG_GRADLE_PROJECT_TILEDB_S3: OFF | |
| Test_Ubuntu_macOS: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest, macos-13, macos-14 ] | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'adopt' | |
| java-version: '11' | |
| check-latest: true | |
| - run: | | |
| unset SYSTEM | |
| ./gradlew checkFormat | |
| shell: bash | |
| name: checkFormat | |
| - run: | | |
| unset SYSTEM | |
| ./gradlew assemble | |
| shell: bash | |
| name: assemble | |
| - run: | | |
| unset SYSTEM | |
| ./gradlew test | |
| shell: bash | |
| name: test | |
| env: | |
| ORG_GRADLE_PROJECT_TILEDB_SERIALIZATION: OFF | |
| ORG_GRADLE_PROJECT_TILEDB_S3: OFF | |
| Examples: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| - run: | | |
| unset SYSTEM | |
| ./gradlew assemble; | |
| shell: bash | |
| name: assemble | |
| - name: Run examples | |
| run: | | |
| cd build/libs | |
| rm *javadoc* *sources* | |
| p=$(readlink -f *.jar) | |
| cd ../../src/main/java/examples/io/tiledb/java/api | |
| javac -cp $p *.java | |
| for x in $(ls -1 *.java | sed 's/.java//'); | |
| do | |
| echo $x; | |
| class_name=examples.io.tiledb.java.api.$x; | |
| java -cp $p $class_name; | |
| done | |
| env: | |
| ORG_GRADLE_PROJECT_TILEDB_SERIALIZATION: OFF | |
| ORG_GRADLE_PROJECT_TILEDB_S3: OFF | |
| Create_Artifacts_Windows: | |
| if: startsWith(github.ref, 'refs/tags/') || contains(github.ref, 'test') | |
| needs: [Test_Windows, Examples] | |
| name: Create_Artifacts_Windows | |
| runs-on: windows-2019 | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| - run: | | |
| mkdir binaries_Windows | |
| ./gradlew.bat assemble | |
| Copy-Item ./build/tiledb_jni/Release/*.dll -Destination ./binaries_Windows/ | |
| Copy-Item ./build/install/bin/*.dll -Destination ./binaries_Windows/ | |
| name: Assemble | |
| - run: | | |
| set -e pipefail | |
| # Display log files if the build failed | |
| echo "Dumping log files for failed build" | |
| echo "----------------------------------" | |
| for f in $(find $BUILD_REPOSITORY_LOCALPATH -name *.log); | |
| do echo "------" | |
| echo $f | |
| echo "======" | |
| cat $f | |
| done; | |
| if: ${{ failure() }} | |
| name: "Print log files (failed build only)" | |
| - name: Archive files | |
| uses: master-atul/[email protected] | |
| id: compress | |
| with: | |
| command: c | |
| cwd: ./ | |
| files: | | |
| ./binaries_Windows | |
| outPath: tiledb-Win.gz.tar | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: Upload-Artifact-Windows | |
| path: tiledb-Win.gz.tar | |
| env: | |
| ORG_GRADLE_PROJECT_TILEDB_S3: ON | |
| Create_Artifacts_Ubuntu_MacOS: | |
| if: startsWith(github.ref, 'refs/tags/') || contains(github.ref, 'test') | |
| needs: [Test_Ubuntu_macOS, Examples] | |
| name: Create_Artifacts_Ubuntu_MacOS | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ macos-13, ubuntu-latest, macos-14] | |
| steps: | |
| - name: Set up Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'adopt' | |
| java-version: '11' | |
| check-latest: true | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| - run: | | |
| set +e | |
| mkdir binaries_$RUNNER_OS | |
| if [[ ( "$RUNNER_OS" == "Linux" ) ]]; then | |
| docker build -f ci/Dockerfile2010 . -t lib_builder_2010 | |
| docker run -e "CFLAGS=$CFLAGS" -e "CPPFLAGS=$CPPFLAGS" -v $(pwd):/TileDB-Java -t lib_builder_2010 /TileDB-Java/ci/build.sh | |
| cp ./build/tiledb_jni/*.so ./build/install/lib/*.so ./build/install/lib64/*.so binaries_$RUNNER_OS/ | |
| fi | |
| if [[ "$RUNNER_OS" == "macOS" ]]; then | |
| if [[ "$(uname -m)" == "arm64" ]]; then | |
| mkdir -p binaries_apple_silicon/arm | |
| ./gradlew -PTILEDB_AZURE=ON assemble | |
| cp ./build/tiledb_jni/arm/*.dylib ./build/install/arm/lib/*.dylib binaries_apple_silicon/arm | |
| else | |
| ./gradlew -PTILEDB_AZURE=ON assemble | |
| cp ./build/tiledb_jni/*.dylib ./build/install/lib/*.dylib binaries_$RUNNER_OS/ | |
| fi | |
| fi | |
| name: 'Build and Upload (Ubuntu and OSX)' | |
| - run: | | |
| if [[ "$RUNNER_OS" == "macOS" ]]; then | |
| if [[ "$(uname -m)" == "arm64" ]]; then | |
| tar cvf tiledb-apple-silicon.gz.tar binaries_apple_silicon/ | |
| else | |
| tar cvf tiledb-$RUNNER_OS.gz.tar binaries_$RUNNER_OS/ | |
| fi | |
| else | |
| tar cvf tiledb-$RUNNER_OS.gz.tar binaries_$RUNNER_OS/ | |
| fi | |
| name: Archive_files | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: Upload-Artifact-Linux | |
| path: '*.gz.tar' | |
| if: runner.os == 'Linux' | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: Upload-Artifact-Mac | |
| path: '*.gz.tar' | |
| if: runner.os == 'macOS' && (runner.arch == 'X86' || runner.arch == 'X64') | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: Upload-Artifact-Mac-Arm | |
| path: '*.gz.tar' | |
| if: runner.os == 'macOS' && (runner.arch == 'ARM' || runner.arch == 'arm64') | |
| env: | |
| ORG_GRADLE_PROJECT_TILEDB_SERIALIZATION: ON | |
| ORG_GRADLE_PROJECT_TILEDB_S3: ON | |
| Mock-Release: | |
| if: startsWith(github.ref, 'refs/tags/') | |
| needs: [Create_Artifacts_Ubuntu_MacOS, Create_Artifacts_Windows] | |
| name: Mock-Release | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set-up Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'adopt' | |
| java-version: '11' | |
| check-latest: true | |
| - uses: actions/download-artifact@v4 | |
| - name: assemble | |
| run: | | |
| chmod +x ./ci/assemble_full_jar.sh | |
| ./ci/assemble_full_jar.sh | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: jars | |
| path: ./jars | |
| env: | |
| ORG_GRADLE_PROJECT_TILEDB_SERIALIZATION: ON | |
| ORG_GRADLE_PROJECT_TILEDB_S3: ON | |
| Test-Mock-Release: | |
| if: startsWith(github.ref, 'refs/tags/') | |
| needs: [ Mock-Release ] | |
| name: Test-Mock-Release | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest, macos-13, macos-14, windows-2019 ] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set-up Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'adopt' | |
| java-version: '11' | |
| check-latest: true | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: jars | |
| - shell: bash | |
| name: Run examples with release jar | |
| run: | | |
| if [[ "$RUNNER_OS" == "macOS" ]]; then | |
| brew install coreutils; | |
| fi | |
| rm *javadoc* *sources* | |
| p=$(realpath *.jar) | |
| # Change directory to the specified path | |
| cd src/main/java/examples/io/tiledb/java/api | |
| # Compile all Java files in the current directory using the classpath obtained earlier | |
| javac -cp "$p" *.java | |
| # Loop through all compiled Java files and run them | |
| for x in $(ls -1 *.java | sed 's/.java//'); do | |
| echo $x; | |
| class_name=examples.io.tiledb.java.api.$x; | |
| java -cp "$p" $class_name; | |
| done | |
| env: | |
| ORG_GRADLE_PROJECT_TILEDB_SERIALIZATION: ON | |
| ORG_GRADLE_PROJECT_TILEDB_S3: ON | |
| Actual-Release: | |
| needs: [ Test-Mock-Release ] | |
| name: Actual-Release | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: actions/download-artifact@v4 | |
| - name: assemble | |
| run: | | |
| chmod +x ./ci/assemble_full_jar.sh; | |
| ./ci/assemble_full_jar.sh; | |
| - name: Create Release | |
| id: create_release | |
| uses: softprops/action-gh-release@v2 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| files: jars/*.jar | |
| tag_name: ${{ github.event.release.tag_name }} | |
| name: ${{ github.event.release.tag_name }} | |
| body: ${{steps.github_release.outputs.changelog}} | |
| draft: false | |
| prerelease: false | |
| - name: Upload to maven | |
| run: | | |
| chmod +x ./ci/upload_to_maven.sh | |
| ./ci/upload_to_maven.sh | |
| shell: bash | |
| env: | |
| GPG_KEY_ID: ${{ secrets.GPG_KEY_ID }} | |
| GPG_PASSPHRASE: ${{ secrets.GPG_PASSPHRASE }} | |
| GPG_SECRET_KEYS_ENC: ${{ secrets.GPG_SECRET_KEYS_ENC }} | |
| SONATYPE_USERNAME: ${{ secrets.SONATYPE_USERNAME }} | |
| SONATYPE_PASSWORD: ${{ secrets.SONATYPE_PASSWORD }} | |
| env: | |
| ORG_GRADLE_PROJECT_TILEDB_SERIALIZATION: ON | |
| ORG_GRADLE_PROJECT_TILEDB_S3: ON |