README

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Obi Griffith edited this page Nov 13, 2016 · 2 revisions

rnaseq_tutorial_wiki

The actual git repo with pull requests enabled, for the rnaseq_tutorial wiki

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Setup

This wiki was setup following these instructions

##Note: The current version of this tutorial is now at www.rnaseq.wiki

Table of Contents
Module 0: Authors | Citation | Syntax | Intro to AWS | Log into AWS | Unix | Environment | Resources
Module 1: Installation | Reference Genomes | Annotations | Indexing | Data | Data QC
Module 2: Adapter Trim | Alignment | IGV | Alignment Visualization | Alignment QC
Module 3: Expression | Differential Expression | DE Visualization
Module 4: Ref Guided | De novo | Merging | Differential Splicing | Splicing Visualization
Module 5: Kallisto
Appendix: Abbreviations | Lectures | Practical Exercise Solutions | Integrated Assignment | Proposed Improvements | AWS Setup