Fixes the tests that got disabled when generating config set es2016 expecting to find libFile and remove incorrect affects flag from listFilesOnly #51243
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tsc --init
with module so we ModuleKine.Amd gets converted to "amd", but swtiching target to es2016 broke them since the test cant find lib file. Fixed those test case to what they intended to check,listFilesOnly
as that is command line option that has no effect on incremental or watch