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chrisgorgo opened this issue Sep 10, 2013 · 0 comments
Closed

nipype depends on dev version of nipy #648

chrisgorgo opened this issue Sep 10, 2013 · 0 comments
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bug critical
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0.9

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@chrisgorgo
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/scr/melisse1/dev/nipype/nipype/interfaces/nipy/preprocess.py in <module>()
    25     from nipy.algorithms.registration import FmriRealign4d as FR4d
    26     from nipy import save_image, load_image
---> 27     from nipy.algorithms.registration import SpaceTimeRealign
    28     from nipy.algorithms.registration.groupwise_registration import SpaceRealign
    29 

ImportError: cannot import name SpaceTimeRealign
@satra satra mentioned this issue Sep 10, 2013
Merged
@satra satra closed this as completed in 4033cb7 Sep 10, 2013
bpinsard pushed a commit to bpinsard/nipype that referenced this issue Sep 11, 2013
Merge branch 'master' into connect_func
eb20247 
* master: (257 commits)
  fix: version property
  doc: added pointer to ants example
  fix: removed cma to freesurfer mapping, updated docs and pointed to atlas/template downloads
  fix: remove np deprecation decorator and moved imports to run_interface.
  fix: explicitly test for nipy version and remove imports to specific interfaces closes nipy#648
  Added FuzzyOverlap to changelog
  fix: set slice_times as seconds outside workflow generating function
  fix: replaced plugin_args with proper arguments
  enh: replace realignment routine with newer Nipype interface for Nipy's newer class
  enh: added SpaceTimeRealign from nipy 0.4.dev
  api: always run datasink and let copyfiles decide if things need to be copied or not. in case inputs are directories, this will allow refreshing outputs.
  fix: moved imports for dicominfo outside of the function
  fix: use ceiling of slice thickness for erosion purposes
  fix: add imports to the functions
  enh: compressing more into functions
  enh: replaced erosion with slicethickness and added epimask support for bbregister
  fix: updated ants example to use new parameters from ants
  tst: fixed ants doctests to indicate smoothing sigmas
  enh: updated antsApplyTransforms to accept input image type
  api: changed smoothing sigmas to accept float in antsRegistration
  ...
bpinsard pushed a commit to bpinsard/nipype that referenced this issue Sep 11, 2013
Merge branch 'master' into ICC
b5e6655 
* master: (444 commits)
  fix: version property
  doc: added pointer to ants example
  fix: removed cma to freesurfer mapping, updated docs and pointed to atlas/template downloads
  fix: remove np deprecation decorator and moved imports to run_interface.
  fix: explicitly test for nipy version and remove imports to specific interfaces closes nipy#648
  Added FuzzyOverlap to changelog
  fix: set slice_times as seconds outside workflow generating function
  fix: replaced plugin_args with proper arguments
  enh: replace realignment routine with newer Nipype interface for Nipy's newer class
  enh: added SpaceTimeRealign from nipy 0.4.dev
  api: always run datasink and let copyfiles decide if things need to be copied or not. in case inputs are directories, this will allow refreshing outputs.
  fix: moved imports for dicominfo outside of the function
  fix: use ceiling of slice thickness for erosion purposes
  fix: add imports to the functions
  enh: compressing more into functions
  enh: replaced erosion with slicethickness and added epimask support for bbregister
  fix: updated ants example to use new parameters from ants
  tst: fixed ants doctests to indicate smoothing sigmas
  enh: updated antsApplyTransforms to accept input image type
  api: changed smoothing sigmas to accept float in antsRegistration
  ...
bpinsard pushed a commit to bpinsard/nipype that referenced this issue Sep 11, 2013
Merge branch 'master' into enh/dcmstack
a6a0276 
* master: (139 commits)
  fix: version property
  doc: added pointer to ants example
  fix: removed cma to freesurfer mapping, updated docs and pointed to atlas/template downloads
  fix: remove np deprecation decorator and moved imports to run_interface.
  fix: explicitly test for nipy version and remove imports to specific interfaces closes nipy#648
  Added FuzzyOverlap to changelog
  fix: set slice_times as seconds outside workflow generating function
  fix: replaced plugin_args with proper arguments
  enh: replace realignment routine with newer Nipype interface for Nipy's newer class
  enh: added SpaceTimeRealign from nipy 0.4.dev
  api: always run datasink and let copyfiles decide if things need to be copied or not. in case inputs are directories, this will allow refreshing outputs.
  fix: moved imports for dicominfo outside of the function
  fix: use ceiling of slice thickness for erosion purposes
  fix: add imports to the functions
  enh: compressing more into functions
  enh: replaced erosion with slicethickness and added epimask support for bbregister
  fix: updated ants example to use new parameters from ants
  tst: fixed ants doctests to indicate smoothing sigmas
  enh: updated antsApplyTransforms to accept input image type
  api: changed smoothing sigmas to accept float in antsRegistration
  ...
bpinsard pushed a commit to bpinsard/nipype that referenced this issue Sep 11, 2013
Merge branch 'master' into enh/similarity4d
a5b9dcf 
* master: (257 commits)
  fix: version property
  doc: added pointer to ants example
  fix: removed cma to freesurfer mapping, updated docs and pointed to atlas/template downloads
  fix: remove np deprecation decorator and moved imports to run_interface.
  fix: explicitly test for nipy version and remove imports to specific interfaces closes nipy#648
  Added FuzzyOverlap to changelog
  fix: set slice_times as seconds outside workflow generating function
  fix: replaced plugin_args with proper arguments
  enh: replace realignment routine with newer Nipype interface for Nipy's newer class
  enh: added SpaceTimeRealign from nipy 0.4.dev
  api: always run datasink and let copyfiles decide if things need to be copied or not. in case inputs are directories, this will allow refreshing outputs.
  fix: moved imports for dicominfo outside of the function
  fix: use ceiling of slice thickness for erosion purposes
  fix: add imports to the functions
  enh: compressing more into functions
  enh: replaced erosion with slicethickness and added epimask support for bbregister
  fix: updated ants example to use new parameters from ants
  tst: fixed ants doctests to indicate smoothing sigmas
  enh: updated antsApplyTransforms to accept input image type
  api: changed smoothing sigmas to accept float in antsRegistration
  ...
bpinsard pushed a commit to bpinsard/nipype that referenced this issue Sep 11, 2013
Merge branch 'master' into spm/gzip
8ce7091 
* master: (193 commits)
  fix: version property
  doc: added pointer to ants example
  fix: removed cma to freesurfer mapping, updated docs and pointed to atlas/template downloads
  fix: remove np deprecation decorator and moved imports to run_interface.
  fix: explicitly test for nipy version and remove imports to specific interfaces closes nipy#648
  Added FuzzyOverlap to changelog
  fix: set slice_times as seconds outside workflow generating function
  fix: replaced plugin_args with proper arguments
  enh: replace realignment routine with newer Nipype interface for Nipy's newer class
  enh: added SpaceTimeRealign from nipy 0.4.dev
  api: always run datasink and let copyfiles decide if things need to be copied or not. in case inputs are directories, this will allow refreshing outputs.
  fix: moved imports for dicominfo outside of the function
  fix: use ceiling of slice thickness for erosion purposes
  fix: add imports to the functions
  enh: compressing more into functions
  enh: replaced erosion with slicethickness and added epimask support for bbregister
  fix: updated ants example to use new parameters from ants
  tst: fixed ants doctests to indicate smoothing sigmas
  enh: updated antsApplyTransforms to accept input image type
  api: changed smoothing sigmas to accept float in antsRegistration
  ...
bpinsard pushed a commit to bpinsard/nipype that referenced this issue Sep 11, 2013
Merge branch 'master' into nipy/slicer
8749653 
* master: (257 commits)
  fix: version property
  doc: added pointer to ants example
  fix: removed cma to freesurfer mapping, updated docs and pointed to atlas/template downloads
  fix: remove np deprecation decorator and moved imports to run_interface.
  fix: explicitly test for nipy version and remove imports to specific interfaces closes nipy#648
  Added FuzzyOverlap to changelog
  fix: set slice_times as seconds outside workflow generating function
  fix: replaced plugin_args with proper arguments
  enh: replace realignment routine with newer Nipype interface for Nipy's newer class
  enh: added SpaceTimeRealign from nipy 0.4.dev
  api: always run datasink and let copyfiles decide if things need to be copied or not. in case inputs are directories, this will allow refreshing outputs.
  fix: moved imports for dicominfo outside of the function
  fix: use ceiling of slice thickness for erosion purposes
  fix: add imports to the functions
  enh: compressing more into functions
  enh: replaced erosion with slicethickness and added epimask support for bbregister
  fix: updated ants example to use new parameters from ants
  tst: fixed ants doctests to indicate smoothing sigmas
  enh: updated antsApplyTransforms to accept input image type
  api: changed smoothing sigmas to accept float in antsRegistration
  ...
bpinsard pushed a commit to bpinsard/nipype that referenced this issue Sep 11, 2013
Merge branch 'master' into nitime
389a587 
* master: (146 commits)
  fix: version property
  doc: added pointer to ants example
  fix: removed cma to freesurfer mapping, updated docs and pointed to atlas/template downloads
  fix: remove np deprecation decorator and moved imports to run_interface.
  fix: explicitly test for nipy version and remove imports to specific interfaces closes nipy#648
  Added FuzzyOverlap to changelog
  fix: set slice_times as seconds outside workflow generating function
  fix: replaced plugin_args with proper arguments
  enh: replace realignment routine with newer Nipype interface for Nipy's newer class
  enh: added SpaceTimeRealign from nipy 0.4.dev
  api: always run datasink and let copyfiles decide if things need to be copied or not. in case inputs are directories, this will allow refreshing outputs.
  fix: moved imports for dicominfo outside of the function
  fix: use ceiling of slice thickness for erosion purposes
  fix: add imports to the functions
  enh: compressing more into functions
  enh: replaced erosion with slicethickness and added epimask support for bbregister
  fix: updated ants example to use new parameters from ants
  tst: fixed ants doctests to indicate smoothing sigmas
  enh: updated antsApplyTransforms to accept input image type
  api: changed smoothing sigmas to accept float in antsRegistration
  ...
bpinsard pushed a commit to bpinsard/nipype that referenced this issue Sep 11, 2013
Merge branch 'master' into load_results
32d2fde 
* master: (218 commits)
  fix: version property
  doc: added pointer to ants example
  fix: removed cma to freesurfer mapping, updated docs and pointed to atlas/template downloads
  fix: remove np deprecation decorator and moved imports to run_interface.
  fix: explicitly test for nipy version and remove imports to specific interfaces closes nipy#648
  Added FuzzyOverlap to changelog
  fix: set slice_times as seconds outside workflow generating function
  fix: replaced plugin_args with proper arguments
  enh: replace realignment routine with newer Nipype interface for Nipy's newer class
  enh: added SpaceTimeRealign from nipy 0.4.dev
  api: always run datasink and let copyfiles decide if things need to be copied or not. in case inputs are directories, this will allow refreshing outputs.
  fix: moved imports for dicominfo outside of the function
  fix: use ceiling of slice thickness for erosion purposes
  fix: add imports to the functions
  enh: compressing more into functions
  enh: replaced erosion with slicethickness and added epimask support for bbregister
  fix: updated ants example to use new parameters from ants
  tst: fixed ants doctests to indicate smoothing sigmas
  enh: updated antsApplyTransforms to accept input image type
  api: changed smoothing sigmas to accept float in antsRegistration
  ...
bpinsard pushed a commit to bpinsard/nipype that referenced this issue Sep 11, 2013
Merge branch 'master' into lif_fmri
0dd8f4a 
* master: (257 commits)
  fix: version property
  doc: added pointer to ants example
  fix: removed cma to freesurfer mapping, updated docs and pointed to atlas/template downloads
  fix: remove np deprecation decorator and moved imports to run_interface.
  fix: explicitly test for nipy version and remove imports to specific interfaces closes nipy#648
  Added FuzzyOverlap to changelog
  fix: set slice_times as seconds outside workflow generating function
  fix: replaced plugin_args with proper arguments
  enh: replace realignment routine with newer Nipype interface for Nipy's newer class
  enh: added SpaceTimeRealign from nipy 0.4.dev
  api: always run datasink and let copyfiles decide if things need to be copied or not. in case inputs are directories, this will allow refreshing outputs.
  fix: moved imports for dicominfo outside of the function
  fix: use ceiling of slice thickness for erosion purposes
  fix: add imports to the functions
  enh: compressing more into functions
  enh: replaced erosion with slicethickness and added epimask support for bbregister
  fix: updated ants example to use new parameters from ants
  tst: fixed ants doctests to indicate smoothing sigmas
  enh: updated antsApplyTransforms to accept input image type
  api: changed smoothing sigmas to accept float in antsRegistration
  ...
bpinsard pushed a commit to bpinsard/nipype that referenced this issue Sep 11, 2013
Merge branch 'master' into enh/freesurfer
08dcb3b 
* master: (255 commits)
  fix: version property
  doc: added pointer to ants example
  fix: removed cma to freesurfer mapping, updated docs and pointed to atlas/template downloads
  fix: remove np deprecation decorator and moved imports to run_interface.
  fix: explicitly test for nipy version and remove imports to specific interfaces closes nipy#648
  Added FuzzyOverlap to changelog
  fix: set slice_times as seconds outside workflow generating function
  fix: replaced plugin_args with proper arguments
  enh: replace realignment routine with newer Nipype interface for Nipy's newer class
  enh: added SpaceTimeRealign from nipy 0.4.dev
  api: always run datasink and let copyfiles decide if things need to be copied or not. in case inputs are directories, this will allow refreshing outputs.
  fix: moved imports for dicominfo outside of the function
  fix: use ceiling of slice thickness for erosion purposes
  fix: add imports to the functions
  enh: compressing more into functions
  enh: replaced erosion with slicethickness and added epimask support for bbregister
  fix: updated ants example to use new parameters from ants
  tst: fixed ants doctests to indicate smoothing sigmas
  enh: updated antsApplyTransforms to accept input image type
  api: changed smoothing sigmas to accept float in antsRegistration
  ...
@effigies effigies modified the milestones: future, 0.9 Feb 23, 2018
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