[WIP] Write interfaces for MRTrix3 #1126
Conversation
Conflicts: nipype/testing/data/von-ray_errmap.nii.gz nipype/testing/data/von_errmap.nii.gz
Conflicts: CHANGES nipype/interfaces/fsl/__init__.py nipype/utils/nipype2boutiques.py
Conflicts: CHANGES
Conflicts: CHANGES nipype/interfaces/setup.py
|
@chrisfilo @satra I was wondering your opinion about this new set of interfaces for MRTrix3. I'd also need your opinion about the new Regarding the features it currently contains, I think it covers enough part of MRTrix3 to merge already. What do you think of maintaining the list of binaries in the wiki and update there the ones supported? |
|
May I ask for your revision? @satra, @chrisfilo (or anyone interested in having MRTrix3 interfaces...) Thanks a lot! 👍 |
|
@oesteban - i think it's fine for mrtrix3 to live beside mrtrix2. would it be possible for you to encourage the mrtrix folks to generate slicer execution model like xml files? then we could automatically generate interfaces for these tools. http://www.slicer.org/slicerUncyclo/index.php/Documentation/Nightly/Developers/SlicerExecutionModel i'm also fine with incrementally adding mrtrix tools and having a wiki to show support. we could start doing this for the big packages in general. over the next few years, i would like to instrument external software to automatically generate specs on how to run them. that's the most scalable option. |
|
Great, thanks! I have created a new wiki page for this: https://github.com/nipy/nipype/wiki/Status-of-interfaces I will post an issue on the github of MRTrix3 to suggest the xml descriptions 👍 |
Conflicts: CHANGES
[ENH] Write interfaces for MRTrix3
List of executables in new MRTrix3:
bin/:scripts/: