pymc-devs · OriolAbril · May 9, 2022 · Feb 27, 2022 · Feb 27, 2022 · Mar 4, 2022
diff --git a/.gitignore b/.gitignore
@@ -1,6 +1,7 @@
 *.pyc
 .ipynb_checkpoints
 .vscode/*
+*.DS_Store
 
 _build
 jupyter_execute
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -55,6 +55,50 @@ repos:
       minimum_pre_commit_version: 2.8.0
       name: Check notebooks have watermark (see Jupyter style guide from PyMC docs)
       types: [jupyter]
+    - id: no-internal-links
+      name: Check no internal links are in the docs
+      description: >-
+        'A quick check to prevent urls pointing to pymc docs'
+      files: ^examples/
+      exclude: >
+          (?x)(index.md|
+               404.md|
+               conf.py|
+               examples/case_studies/LKJ.ipynb|
+               examples/case_studies/LKJ.ipynb|
+               examples/case_studies/blackbox_external_likelihood.ipynb|
+               examples/case_studies/blackbox_external_likelihood_numpy.ipynb|
+               examples/case_studies/item_response_nba.ipynb|
+               examples/case_studies/multilevel_modeling.ipynb|
+               examples/diagnostics_and_criticism/sampler-stats.ipynb|
+               examples/gaussian_processes/GP-MaunaLoa2.ipynb|
+               examples/generalized_linear_models/GLM-logistic.ipynb|
+               examples/generalized_linear_models/GLM-out-of-sample-predictions.ipynb|
+               examples/generalized_linear_models/GLM-poisson-regression.ipynb|
+               examples/generalized_linear_models/GLM-robust.ipynb|
+               examples/generalized_linear_models/GLM-rolling-regression.ipynb|
+               examples/generalized_linear_models/GLM-simpsons-paradox.ipynb|
+               examples/pymc3_howto/api_quickstart.ipynb|
+               examples/samplers/MLDA_gravity_surveying.ipynb|
+               examples/samplers/MLDA_simple_linear_regression.ipynb|
+               examples/samplers/SMC-ABC_Lotka-Volterra_example.ipynb|
+               examples/splines/spline.ipynb|
+               examples/survival_analysis/censored_data.ipynb|
+               examples/survival_analysis/weibull_aft.ipynb)
+      entry: >
+          (?x)(arviz-devs.github.io|
+               aesara.readthedocs.io|
+               aeppl.readthedocs.io|
+               pymc-experimental.readthedocs.io|
+               docs.pymc.io|
+               numpy.org/doc|
+               pymc-examples.readthedocs.io|
+               docs.python.org|
+               xarray.pydata.org
+               python.arviz.org|
+               docs.xarray.dev)
+      language: pygrep
+      types_or: [markdown, rst, jupyter]
 - repo: https://github.com/mwouts/jupytext
   rev: v1.13.7
   hooks:

diff --git a/examples/case_studies/item_response_nba.ipynb b/examples/case_studies/item_response_nba.ipynb
diff --git a/examples/case_studies/multilevel_modeling.ipynb b/examples/case_studies/multilevel_modeling.ipynb
diff --git a/examples/case_studies/partial_pooled_model.png b/examples/case_studies/partial_pooled_model.png
diff --git a/examples/case_studies/pooled_model.png b/examples/case_studies/pooled_model.png
diff --git a/examples/case_studies/regression_discontinuity.ipynb b/examples/case_studies/regression_discontinuity.ipynb
diff --git a/examples/case_studies/regression_discontinuity.png b/examples/case_studies/regression_discontinuity.png
diff --git a/examples/case_studies/unpooled_model.png b/examples/case_studies/unpooled_model.png
diff --git a/examples/case_studies/wrapping_jax_function.ipynb b/examples/case_studies/wrapping_jax_function.ipynb
diff --git a/examples/conf.py b/examples/conf.py
@@ -53,7 +53,7 @@
         },
         {
             "name": "Twitter",
-            "url": "https://twitter.com/pymc-devs",
+            "url": "https://twitter.com/pymc_devs",
             "icon": "fab fa-twitter-square",
         },
         {

diff --git a/examples/data/monthly_in_situ_co2_mlo.csv b/examples/data/monthly_in_situ_co2_mlo.csv
diff --git a/examples/gaussian_processes/GP-MaunaLoa.ipynb b/examples/gaussian_processes/GP-MaunaLoa.ipynb
diff --git a/examples/mixture_models/gaussian_mixture_model.ipynb b/examples/mixture_models/gaussian_mixture_model.ipynb
diff --git a/examples/references.bib b/examples/references.bib
@@ -58,6 +58,12 @@ @article{efron1975data
   year          = {1975},
   publisher     = {Taylor \& Francis}
 }
+@book{fox2010bayesian,
+  title         = {Bayesian item response modeling: Theory and applications},
+  author        = {Fox, Jean-Paul},
+  year          = {2010},
+  publisher     = {Springer}
+}
 @book{gelman2006data,
   title         = {Data analysis using regression and multilevel/hierarchical models},
   author        = {Gelman, Andrew and Hill, Jennifer},
@@ -332,6 +338,14 @@ @article{nuijten2015default
   year          = {2015},
   publisher     = {Springer}
 }
+@book{rasmussen2003gaussian,
+  title         = {Gaussian Processes for Machine Learning},
+  author        = {Rasmussen, Carl Edward and Williams, Christopher K. I.},
+  year          = {2006},
+  isbn          = {026218253X},
+  publisher     = {The MIT Press},
+  url           = {https://gaussianprocess.org/gpml/}
+}
 @book{roback2021beyond,
   title         = {Beyond multiple linear regression: Applied generalized linear models and multilevel models in R},
   author        = {Roback, P., and Legler, J.},

diff --git a/myst_nbs/case_studies/item_response_nba.myst.md b/myst_nbs/case_studies/item_response_nba.myst.md