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fix notebook wrong upload
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notebooks/developers_resources/storage_format/multiple_elements.ipynb

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@@ -124,23 +124,10 @@
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},
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{
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"cell_type": "code",
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"execution_count": 12,
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"execution_count": 4,
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"id": "b2952c64-5502-4462-9be0-a32fdb61158c",
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"metadata": {},
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"outputs": [
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{
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"ename": "AssertionError",
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"evalue": "",
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"output_type": "error",
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"traceback": [
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"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
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"\u001b[0;31mAssertionError\u001b[0m Traceback (most recent call last)",
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"Cell \u001b[0;32mIn[12], line 3\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01mlogging\u001b[39;00m\n\u001b[1;32m 2\u001b[0m logging\u001b[38;5;241m.\u001b[39mgetLogger(\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mome_zarr\u001b[39m\u001b[38;5;124m'\u001b[39m)\u001b[38;5;241m.\u001b[39msetLevel(logging\u001b[38;5;241m.\u001b[39mERROR)\n\u001b[0;32m----> 3\u001b[0m \u001b[43mwrite_sdata_and_check_consistency\u001b[49m\u001b[43m(\u001b[49m\u001b[43msdata\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43msdata\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mname\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mNAME\u001b[49m\u001b[43m)\u001b[49m\n",
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"File \u001b[0;32m~/embl/projects/basel/spatialdata-notebooks/notebooks/developers_resources/storage_format/io_utils.py:84\u001b[0m, in \u001b[0;36mwrite_sdata_and_check_consistency\u001b[0;34m(sdata, name)\u001b[0m\n\u001b[1;32m 59\u001b[0m \u001b[38;5;250m\u001b[39m\u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m 60\u001b[0m \u001b[38;5;124;03mWrite SpatialData instance to file, reload it, and check for consistency.\u001b[39;00m\n\u001b[1;32m 61\u001b[0m \n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 81\u001b[0m \u001b[38;5;124;03m>>> write_sdata_and_check_consistency(sdata, 'testfile') # will create testfile.zarr\u001b[39;00m\n\u001b[1;32m 82\u001b[0m \u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[1;32m 83\u001b[0m f1 \u001b[38;5;241m=\u001b[39m \u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;132;01m{\u001b[39;00mname\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m.zarr\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[0;32m---> 84\u001b[0m \u001b[38;5;28;01massert\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m os\u001b[38;5;241m.\u001b[39mpath\u001b[38;5;241m.\u001b[39mexists(f1)\n\u001b[1;32m 85\u001b[0m sdata\u001b[38;5;241m.\u001b[39mwrite(f1)\n\u001b[1;32m 87\u001b[0m \u001b[38;5;28;01mwith\u001b[39;00m tempfile\u001b[38;5;241m.\u001b[39mTemporaryDirectory() \u001b[38;5;28;01mas\u001b[39;00m tmpdir:\n",
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"\u001b[0;31mAssertionError\u001b[0m: "
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]
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}
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],
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"outputs": [],
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"source": [
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"import logging\n",
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"\n",

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