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Merged
merged 27 commits into from
Mar 24, 2024
Merged

Improved documentation #79

merged 27 commits into from
Mar 24, 2024

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LucaMarconato
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@LucaMarconato LucaMarconato commented Mar 18, 2024 •
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For a later PR:

  • add new notebook on data models
  • add new notebook on Xenium
  • add new notebook on multiple tables

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@LucaMarconato LucaMarconato changed the title improved squidpy notebook Improved documentation Mar 18, 2024
@LucaMarconato LucaMarconato mentioned this pull request Mar 21, 2024
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LucaMarconato and others added 18 commits March 21, 2024 15:08
@LucaMarconato
tiny fixes squidpy notebook
144a13d
@LucaMarconato
fixed 00_xenium_and_visium
ebbef74
cleanup cosmx notebook before warnings are fixed
189bf58
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
ce9f42a 
for more information, see https://pre-commit.ci
fixes notebooks speed_up_illustration and cosmx
9edc0e3
Merge branch 'improve/docs' of https://github.com/scverse/spatialdata…
fe7af95 
…-notebooks into improve/docs
fixed notebook speed_up_illustration
6760350
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
ce87b30 
for more information, see https://pre-commit.ci
reduced size plot speed_up_illustration notebook
63c452a
reduced size plot speed_up_illustration notebook
4784b27
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
f8aefc1 
for more information, see https://pre-commit.ci
@LucaMarconato
reproducibility check xenium_visium notebooks
c6dd4db
fixed notebook 00
c0dea5a
@melonora
correct outlines
8614be9
@LucaMarconato
example of assigning cells to rois and computing fractional overlap
9ea096f
@LucaMarconato
Merge branch 'improve/docs' of https://github.com/scverse/spatialdata…
4b80dd5 
…-notebooks into improve/docs
@LucaMarconato
removed fractional overlap approach
77a6d73
@melonora
update limitation
6e98986
@LucaMarconato LucaMarconato marked this pull request as ready for review March 24, 2024 04:01
@LucaMarconato LucaMarconato merged commit 0d6ce8d into main Mar 24, 2024
@LucaMarconato LucaMarconato deleted the improve/docs branch March 24, 2024 04:07
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@LucaMarconato @melonora