add squidpy way to handle segment (#45)

Co-authored-by: Tim Treis <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Author: 3 people

docs/conf.py

@@ -90,6 +90,9 @@
     "python": ("https://docs.python.org/3", None),
     "anndata": ("https://anndata.readthedocs.io/en/stable/", None),
     "numpy": ("https://numpy.org/doc/stable/", None),
+    "matplotlib": ("https://matplotlib.org/stable/", None),
+    "spatialdata": ("https://scverse-spatialdata.readthedocs.io/en/latest/", None),
+    "skimage": ("https://scikit-image.org/docs/stable/", None),
 }
 
 # List of patterns, relative to source directory, that match files and

pyproject.toml

@@ -23,6 +23,7 @@ dependencies = [
     "matplotlib",
     "scikit-learn",
     "scanpy",
+    "matplotlib_scalebar"
 ]
 
 [project.optional-dependencies]

src/spatialdata_plot/__init__.py

@@ -1,7 +1,7 @@
 from importlib.metadata import version
 
-from . import pl, pp, tl
+from . import pl, pp
 
-__all__ = ["pl", "pp", "tl"]
+__all__ = ["pl", "pp"]
 
 # __version__ = version("spatialdata-plot")