Removes rej files

.github/codecov.yml

@@ -1,20 +1,20 @@
 # Based on pydata/xarray
 codecov:
-    require_ci_to_pass: false
+  require_ci_to_pass: false
 
 coverage:
-    status:
-        project:
-            default:
-                # Require 1% coverage, i.e., always succeed
-                target: 1
-        patch: false
-        changes: false
+  status:
+    project:
+      default:
+        # Require 1% coverage, i.e., always succeed
+        target: 1
+    patch: false
+    changes: false
 
 comment:
-    layout: "diff, flags, files"
-    behavior: once
-    require_base: false
+  layout: "diff, flags, files"
+  behavior: once
+  require_base: false
 
 fixes:
-    - "/spatialdata-plot/spatialdata-plot/::spatialdata-plot/src/spatialdat_plot/"
+  - "/spatialdata-plot/spatialdata-plot/::spatialdata-plot/src/spatialdat_plot/"

.github/workflows/build.yaml

@@ -1,23 +1,23 @@
 name: Check Build
 
 on:
-    push:
-        branches: [main]
-    pull_request:
-        branches: [main]
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
 
 jobs:
-    package:
-        runs-on: ubuntu-latest
-        steps:
-            - uses: actions/checkout@v2
-            - name: Set up Python 3.10
-              uses: actions/setup-python@v2
-              with:
-                  python-version: "3.10"
-            - name: Install build dependencies
-              run: python -m pip install --upgrade pip wheel twine build
-            - name: Build package
-              run: python -m build
-            - name: Check package
-              run: twine check --strict dist/*.whl
+  package:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v2
+        with:
+          python-version: "3.10"
+      - name: Install build dependencies
+        run: python -m pip install --upgrade pip wheel twine build
+      - name: Build package
+        run: python -m build
+      - name: Check package
+        run: twine check --strict dist/*.whl

.github/workflows/test_and_deploy.yaml

@@ -1,103 +1,103 @@
 name: Test
 
 on:
-    push:
-        branches: [main]
-        tags:
-            - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
-    pull_request:
-        branches: [main]
+  push:
+    branches: [main]
+    tags:
+      - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
+  pull_request:
+    branches: [main]
 
 jobs:
-    test:
-        runs-on: ${{ matrix.os }}
-        defaults:
-            run:
-                shell: bash -e {0} # -e to fail on error
+  test:
+    runs-on: ${{ matrix.os }}
+    defaults:
+      run:
+        shell: bash -e {0} # -e to fail on error
 
-        strategy:
-            fail-fast: false
-            matrix:
-                python: ["3.9", "3.10"]
-                os: [ubuntu-latest]
+    strategy:
+      fail-fast: false
+      matrix:
+        python: ["3.9", "3.10"]
+        os: [ubuntu-latest]
 
-        env:
-            OS: ${{ matrix.os }}
-            PYTHON: ${{ matrix.python }}
+    env:
+      OS: ${{ matrix.os }}
+      PYTHON: ${{ matrix.python }}
 
-        steps:
-            - uses: actions/checkout@v3
-            - name: Set up Python ${{ matrix.python }}
-              uses: actions/setup-python@v3
-              with:
-                  python-version: ${{ matrix.python }}
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python ${{ matrix.python }}
+        uses: actions/setup-python@v3
+        with:
+          python-version: ${{ matrix.python }}
 
-            - name: Get pip cache dir
-              id: pip-cache-dir
-              run: |
-                  echo "::set-output name=dir::$(pip cache dir)"
-            - name: Restore pip cache
-              uses: actions/cache@v3
-              with:
-                  path: ${{ steps.pip-cache-dir.outputs.dir }}
-                  key: pip-${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('**/pyproject.toml') }}
-                  restore-keys: |
-                      pip-${{ runner.os }}-${{ env.pythonLocation }}-
-            - name: Install test dependencies
-              run: |
-                  python -m pip install --upgrade pip wheel
-                  pip install pytest-cov
-            - name: Install dependencies
-              run: |
-                  pip install -e ".[dev,test]"
-            - name: Test
-              env:
-                  MPLBACKEND: agg
-                  PLATFORM: ${{ matrix.os }}
-                  DISPLAY: :42
-              run: |
-                  pytest -v --cov --color=yes --cov-report=xml
-            # - name: Generate GH action "groundtruth" figures as artifacts, uncomment if needed
-            #   if: always()
-            #   uses: actions/upload-artifact@v3
-            #   with:
-            #       name: groundtruth-figures
-            #       path: /home/runner/work/spatialdata-plot/spatialdata-plot/tests/_images/*
-            - name: Archive figures generated during testing
-              if: always()
-              uses: actions/upload-artifact@v3
-              with:
-                  name: plotting-results
-                  path: /home/runner/work/spatialdata-plot/spatialdata-plot/tests/figures/*
-            - name: Upload coverage to Codecov
-              uses: codecov/codecov-action@v3
-              with:
-                  token: ${{ secrets.CODECOV_TOKEN }}
-                  fail_ci_if_error: true # optional (default = false)
-                  verbose: true # optional (default = false)
-    deploy:
-        # this will run when you have tagged a commit, starting with "v*"
-        # and requires that you have put your twine API key in your
-        # github secrets (see readme for details)
-        needs: [test]
-        runs-on: ubuntu-latest
-        if: contains(github.ref, 'tags')
-        steps:
-            - name: Checkout code
-              uses: actions/checkout@v3
+      - name: Get pip cache dir
+        id: pip-cache-dir
+        run: |
+          echo "::set-output name=dir::$(pip cache dir)"
+      - name: Restore pip cache
+        uses: actions/cache@v3
+        with:
+          path: ${{ steps.pip-cache-dir.outputs.dir }}
+          key: pip-${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('**/pyproject.toml') }}
+          restore-keys: |
+            pip-${{ runner.os }}-${{ env.pythonLocation }}-
+      - name: Install test dependencies
+        run: |
+          python -m pip install --upgrade pip wheel
+          pip install pytest-cov
+      - name: Install dependencies
+        run: |
+          pip install -e ".[dev,test]"
+      - name: Test
+        env:
+          MPLBACKEND: agg
+          PLATFORM: ${{ matrix.os }}
+          DISPLAY: :42
+        run: |
+          pytest -v --cov --color=yes --cov-report=xml
+      # - name: Generate GH action "groundtruth" figures as artifacts, uncomment if needed
+      #   if: always()
+      #   uses: actions/upload-artifact@v3
+      #   with:
+      #       name: groundtruth-figures
+      #       path: /home/runner/work/spatialdata-plot/spatialdata-plot/tests/_images/*
+      - name: Archive figures generated during testing
+        if: always()
+        uses: actions/upload-artifact@v3
+        with:
+          name: plotting-results
+          path: /home/runner/work/spatialdata-plot/spatialdata-plot/tests/figures/*
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v3
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          fail_ci_if_error: true # optional (default = false)
+          verbose: true # optional (default = false)
+  deploy:
+    # this will run when you have tagged a commit, starting with "v*"
+    # and requires that you have put your twine API key in your
+    # github secrets (see readme for details)
+    needs: [test]
+    runs-on: ubuntu-latest
+    if: contains(github.ref, 'tags')
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v3
 
-            - name: Set up Python 3.10
-              uses: actions/setup-python@v4
-              with:
-                  python-version: "3.10"
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
 
-            - name: Install hatch
-              run: pip install hatch
+      - name: Install hatch
+        run: pip install hatch
 
-            - name: Build project for distribution
-              run: hatch build
+      - name: Build project for distribution
+        run: hatch build
 
-            - name: Publish a Python distribution to PyPI
-              uses: pypa/gh-action-pypi-publish@release/v1
-              with:
-                  password: ${{ secrets.PYPI_API_TOKEN }}
+      - name: Publish a Python distribution to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.PYPI_API_TOKEN }}

.pre-commit-config.yaml

@@ -1,33 +1,33 @@
 fail_fast: false
 default_language_version:
-    python: python3
+  python: python3
 default_stages:
-    - commit
-    - push
+  - commit
+  - push
 minimum_pre_commit_version: 2.16.0
 ci:
-    skip: []
+  skip: []
 repos:
-    - repo: https://github.com/psf/black
-      rev: 23.11.0
-      hooks:
-          - id: black
-    - repo: https://github.com/pre-commit/mirrors-prettier
-      rev: v3.1.0
-      hooks:
-          - id: prettier
-    - repo: https://github.com/asottile/blacken-docs
-      rev: 1.16.0
-      hooks:
-          - id: blacken-docs
-    - repo: https://github.com/pre-commit/mirrors-mypy
-      rev: v1.7.0
-      hooks:
-          - id: mypy
-            additional_dependencies: [numpy, types-requests]
-            exclude: tests/|docs/
-    - repo: https://github.com/astral-sh/ruff-pre-commit
-      rev: v0.1.6
-      hooks:
-          - id: ruff
-            args: [--fix, --exit-non-zero-on-fix]
+  - repo: https://github.com/psf/black
+    rev: 23.11.0
+    hooks:
+      - id: black
+  - repo: https://github.com/pre-commit/mirrors-prettier
+    rev: v3.1.0
+    hooks:
+      - id: prettier
+  - repo: https://github.com/asottile/blacken-docs
+    rev: 1.16.0
+    hooks:
+      - id: blacken-docs
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: v1.7.0
+    hooks:
+      - id: mypy
+        additional_dependencies: [numpy, types-requests]
+        exclude: tests/|docs/
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.1.6
+    hooks:
+      - id: ruff
+        args: [--fix, --exit-non-zero-on-fix]