Added script to run real-world data

test_sandbox_data.py

@@ -0,0 +1,44 @@
+#!/usr/bin/env python
+
+# # Load real-world data and verify that functions run on it
+# ### How to use this script
+# - If you need it interactive, convert it to a jupyter notebook with `p2j` -> `p2j test_sandbox_data.py`
+# - You can use `jupyter nbconvert --to python test_sandbox_data.ipynb` to convert it back
+# - Otherwise run it from the CLI and verify that the plots are okay
+
+# In[4]:
+
+
+import matplotlib.pyplot as plt
+import spatialdata as sd
+
+import spatialdata_plot
+
+assert spatialdata_plot.__name__ == "spatialdata_plot"  # so mypy doesn't complain
+
+DATA_DIR = "/Users/tim.treis/Documents/GitHub/spatialdata-sandbox/"
+
+
+# ## Load data
+# Adjust paths as neccecary
+
+# In[15]:
+
+
+# Mibi
+
+sdata = sd.read_zarr(DATA_DIR + "mibitof/data.zarr")
+sdata.pl.render_images().pl.render_labels().pl.show()
+
+plt.savefig("mibi.png")
+
+
+# In[16]:
+
+
+# Visium
+
+sdata = sd.read_zarr(DATA_DIR + "visium/data.zarr")
+sdata.pl.render_images().pl.render_shapes().pl.show(width=12, height=12)
+
+plt.savefig("visium.png")