allow for plotting using specific table #217
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melonora
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Mar 19, 2024
* allow for plotting using specific table (#217) * allow for plotting using specific table * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Change into get with default return * fix issues with pp * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * ensure instance key coercable to int dtype * add table keys import * allow feature branches tests * remove table key getters * extract into function * add docstring * don't create unnecessary anndata * allow for label color without specified table * refactor show param validations * refactor show param validations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * big refactor * remove unused render_params.layer * remove redundant code * refactor to mapping * allow later creation of mapping * reimplement color label * fix unused arguments * change points shapes logic * unfixed full implementation * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix tests * fix tests * remove duplicate checks * implement nested list groups palette * fix tests * fix or mistake * add dummy test * Change to warning * partial fix mypy * add function type hints --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * silence table deprecation warning * fix tests * silence deprecations and other warnings * Fix incorrect conditional * refactor wanted_elements * remove unwanted extend * further refactor * using getattr * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * change palette * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Remove color if no table * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixed! (#222) * fixed! * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Partial fixes mypy (#224) * fix mypy * shut more mypy up * some mypy --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: LucaMarconato <[email protected]>
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Pretty much as the title states. This PR does have a dependency on 2 current PRs in the
SpatialDatarepo, namely #459 and #460.